Wall clock time and date at job start Mon Mar 30 2020 20:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39209 * 120.16088 * 2 1 4 4 C 1.47675 * 133.75233 * 359.96429 * 3 2 1 5 5 C 1.40895 * 126.92188 * 0.02562 * 4 3 2 6 6 H 1.07992 * 120.00201 * 18.93751 * 5 4 3 7 7 C 1.39741 * 119.99793 * 198.94357 * 5 4 3 8 8 N 1.31059 * 119.99892 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99940 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47336 * 59.99891 * 9 7 5 11 11 H 1.48506 * 109.46950 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47085 * 299.99688 * 9 7 5 13 13 C 1.38892 * 106.15248 * 180.02562 * 4 3 2 14 14 N 1.35631 * 109.28918 * 359.47960 * 13 4 3 15 15 H 0.96995 * 124.70195 * 179.97438 * 14 13 4 16 16 C 1.38247 * 110.59733 * 0.63535 * 14 13 4 17 17 C 1.39110 * 132.76324 * 179.28914 * 16 14 13 18 18 C 1.37854 * 120.00253 * 179.97438 * 17 16 14 19 19 C 1.38084 * 120.16692 * 180.26572 * 2 1 3 20 20 F 1.35097 * 119.89929 * 0.02562 * 19 2 1 21 21 H 1.08996 * 109.47617 * 275.31820 * 1 2 3 22 22 H 1.08999 * 109.47255 * 35.32399 * 1 2 3 23 23 H 1.09001 * 109.46725 * 155.32073 * 1 2 3 24 24 H 0.97000 * 119.99454 * 180.02562 * 8 7 5 25 25 H 1.08005 * 125.36171 * 179.97438 * 13 4 3 26 26 H 1.07998 * 119.99995 * 0.02562 * 17 16 14 27 27 H 1.08003 * 119.70352 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2064 1.2036 0.0000 4 6 1.7972 2.6225 -0.0007 5 6 0.4804 3.1237 -0.0010 6 1 -0.3390 2.4891 0.3027 7 6 0.2346 4.4418 -0.3945 8 7 1.2290 5.2120 -0.7627 9 14 -1.5112 5.1065 -0.3943 10 1 -2.0689 5.0324 0.9799 11 1 -1.5026 6.5202 -0.8490 12 1 -2.3496 4.2956 -1.3132 13 6 2.9720 3.3635 -0.0009 14 7 4.0338 2.5197 0.0113 15 1 4.9622 2.8005 0.0132 16 6 3.6096 1.2040 0.0055 17 6 4.2918 -0.0084 0.0002 18 6 3.5894 -1.1945 -0.0045 19 6 2.2008 -1.1938 -0.0055 20 9 1.5267 -2.3646 -0.0115 21 1 -0.3634 0.0952 1.0232 22 1 -0.3634 0.8385 -0.5942 23 1 -0.3633 -0.9338 -0.4291 24 1 1.0583 6.1271 -1.0355 25 1 3.0308 4.4419 -0.0017 26 1 5.3717 -0.0203 0.0006 27 1 4.1240 -2.1330 -0.0081 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238490079.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:27 Heat of formation + Delta-G solvation = -7.160822 kcal Electronic energy + Delta-G solvation = -14209.353557 eV Core-core repulsion = 11653.259442 eV Total energy + Delta-G solvation = -2556.094114 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.94650 -39.77211 -35.67510 -33.69866 -31.98474 -28.99789 -27.66793 -26.37252 -24.37669 -21.20236 -20.80796 -19.47107 -17.05561 -16.33568 -15.90946 -15.10255 -14.79557 -14.69470 -14.04149 -13.12133 -12.77221 -12.55894 -12.33375 -12.18762 -12.17377 -11.32350 -11.23567 -11.18920 -11.03014 -10.48485 -10.16285 -9.80504 -9.66837 -9.23336 -8.31819 -7.03221 -6.64654 -6.54132 -4.04300 1.99131 2.36625 3.09875 3.15526 3.19091 4.04869 4.14692 4.43105 4.60509 5.22684 5.45252 5.53297 5.63893 6.06391 6.11015 6.29061 6.44124 6.55228 6.78112 6.79905 7.00585 7.06252 7.16635 7.35842 7.58335 7.68563 7.96498 8.23532 8.59003 8.92806 9.06651 9.11872 10.47267 Molecular weight = 219.08amu Principal moments of inertia in cm(-1) A = 0.034862 B = 0.010177 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.981654 B = 2750.714917 C = 3519.809271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.051 4.051 3 C -0.108 4.108 4 C 0.026 3.974 5 C -0.427 4.427 6 H 0.077 0.923 7 C 0.059 3.941 8 N -0.834 5.834 9 Si 0.913 3.087 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.269 1.269 13 C -0.078 4.078 14 N -0.587 5.587 15 H 0.396 0.604 16 C 0.077 3.923 17 C -0.131 4.131 18 C -0.142 4.142 19 C 0.013 3.987 20 F -0.159 7.159 21 H 0.065 0.935 22 H 0.086 0.914 23 H 0.053 0.947 24 H 0.274 0.726 25 H 0.181 0.819 26 H 0.110 0.890 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.432 -4.338 0.890 5.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.052 4.052 3 C -0.115 4.115 4 C 0.021 3.979 5 C -0.459 4.459 6 H 0.095 0.905 7 C -0.152 4.152 8 N -0.464 5.464 9 Si 0.739 3.261 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.194 1.194 13 C -0.202 4.202 14 N -0.187 5.187 15 H 0.229 0.771 16 C -0.035 4.035 17 C -0.152 4.152 18 C -0.162 4.162 19 C -0.008 4.008 20 F -0.138 7.138 21 H 0.083 0.917 22 H 0.105 0.895 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.197 0.803 26 H 0.128 0.872 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.480 -3.986 0.815 4.764 hybrid contribution -0.302 0.310 -0.111 0.447 sum 2.178 -3.676 0.703 4.330 Atomic orbital electron populations 1.20757 0.91380 1.02444 1.02306 1.19155 0.95872 0.90358 0.99839 1.19150 0.91515 0.93870 1.06942 1.17981 0.93203 0.86116 1.00561 1.18781 0.92406 0.96018 1.38727 0.90452 1.25662 0.98634 0.96844 0.94022 1.69629 1.32240 1.07662 1.36883 0.86280 0.82631 0.77904 0.79304 1.19362 1.20734 1.19386 1.22820 0.84141 0.95559 1.17662 1.41495 1.08135 1.03679 1.65438 0.77071 1.18203 0.93901 0.85328 1.06023 1.19576 0.97978 0.89498 1.08165 1.20315 0.91974 0.97598 1.06355 1.16985 0.89674 0.80239 1.13946 1.91337 1.80740 1.46481 1.95226 0.91675 0.89541 0.92848 0.91581 0.80278 0.87154 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 9.00 36.00 0.32 -1.94 15 2 C -0.05 -1.13 5.91 -104.32 -0.62 -1.75 15 3 C -0.11 -2.61 6.15 -104.90 -0.65 -3.26 15 4 C 0.03 0.69 6.01 -104.80 -0.63 0.06 15 5 C -0.43 -11.16 8.44 -38.02 -0.32 -11.48 15 6 H 0.08 1.93 5.92 -52.49 -0.31 1.62 15 7 C 0.06 1.49 5.48 -17.32 -0.09 1.39 15 8 N -0.83 -21.33 10.69 55.54 0.59 -20.74 15 9 Si 0.91 19.14 29.56 -169.99 -5.02 14.12 15 10 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 11 H -0.28 -5.82 7.11 56.52 0.40 -5.41 15 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 13 C -0.08 -1.90 10.79 -15.63 -0.17 -2.07 15 14 N -0.59 -12.32 5.99 -9.80 -0.06 -12.38 15 15 H 0.40 6.69 8.96 -40.82 -0.37 6.32 15 16 C 0.08 1.68 7.23 -83.86 -0.61 1.08 15 17 C -0.13 -2.46 10.07 -39.40 -0.40 -2.86 15 18 C -0.14 -2.66 9.99 -39.49 -0.39 -3.06 15 19 C 0.01 0.26 7.24 -39.41 -0.29 -0.02 15 20 F -0.16 -3.14 16.38 2.25 0.04 -3.11 15 21 H 0.06 1.24 8.14 -51.93 -0.42 0.81 15 22 H 0.09 1.82 6.10 -51.93 -0.32 1.50 15 23 H 0.05 0.96 7.48 -51.93 -0.39 0.58 15 24 H 0.27 6.51 8.30 -40.82 -0.34 6.17 15 25 H 0.18 4.49 6.21 -52.48 -0.33 4.17 15 26 H 0.11 1.71 8.06 -52.49 -0.42 1.28 15 27 H 0.12 1.85 8.06 -52.48 -0.42 1.43 15 LS Contribution 237.48 15.07 3.58 3.58 Total: -1.00 -27.51 237.48 -6.82 -34.33 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -2.11 Total: 8.10 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -3.83 Total: -23.90 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.53 Total: -33.12 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.04 Total: -3.11 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.51 -6.82 -34.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238490079.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.164 kcal (2) G-P(sol) polarization free energy of solvation -27.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds