Wall clock time and date at job start Mon Mar 30 2020 20:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39209 * 120.16088 * 2 1 4 4 C 1.47675 * 133.75233 * 359.96429 * 3 2 1 5 5 C 1.40895 * 126.92188 * 0.02562 * 4 3 2 6 6 H 1.07992 * 120.00201 * 18.93751 * 5 4 3 7 7 C 1.39741 * 119.99793 * 198.94357 * 5 4 3 8 8 N 1.31059 * 119.99892 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99940 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47336 * 59.99891 * 9 7 5 11 11 H 1.48506 * 109.46950 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47085 * 299.99688 * 9 7 5 13 13 C 1.38892 * 106.15248 * 180.02562 * 4 3 2 14 14 N 1.35631 * 109.28918 * 359.47960 * 13 4 3 15 15 H 0.96995 * 124.70195 * 179.97438 * 14 13 4 16 16 C 1.38247 * 110.59733 * 0.63535 * 14 13 4 17 17 C 1.39110 * 132.76324 * 179.28914 * 16 14 13 18 18 C 1.37854 * 120.00253 * 179.97438 * 17 16 14 19 19 C 1.38084 * 120.16692 * 180.26572 * 2 1 3 20 20 F 1.35097 * 119.89929 * 0.02562 * 19 2 1 21 21 H 1.08996 * 109.47617 * 275.31820 * 1 2 3 22 22 H 1.08999 * 109.47255 * 35.32399 * 1 2 3 23 23 H 1.09001 * 109.46725 * 155.32073 * 1 2 3 24 24 H 0.97000 * 119.99454 * 180.02562 * 8 7 5 25 25 H 1.08005 * 125.36171 * 179.97438 * 13 4 3 26 26 H 1.07998 * 119.99995 * 0.02562 * 17 16 14 27 27 H 1.08003 * 119.70352 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2064 1.2036 0.0000 4 6 1.7972 2.6225 -0.0007 5 6 0.4804 3.1237 -0.0010 6 1 -0.3390 2.4891 0.3027 7 6 0.2346 4.4418 -0.3945 8 7 1.2290 5.2120 -0.7627 9 14 -1.5112 5.1065 -0.3943 10 1 -2.0689 5.0324 0.9799 11 1 -1.5026 6.5202 -0.8490 12 1 -2.3496 4.2956 -1.3132 13 6 2.9720 3.3635 -0.0009 14 7 4.0338 2.5197 0.0113 15 1 4.9622 2.8005 0.0132 16 6 3.6096 1.2040 0.0055 17 6 4.2918 -0.0084 0.0002 18 6 3.5894 -1.1945 -0.0045 19 6 2.2008 -1.1938 -0.0055 20 9 1.5267 -2.3646 -0.0115 21 1 -0.3634 0.0952 1.0232 22 1 -0.3634 0.8385 -0.5942 23 1 -0.3633 -0.9338 -0.4291 24 1 1.0583 6.1271 -1.0355 25 1 3.0308 4.4419 -0.0017 26 1 5.3717 -0.0203 0.0006 27 1 4.1240 -2.1330 -0.0081 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238490079.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:27 Heat of formation + Delta-G solvation = -22.015525 kcal Electronic energy + Delta-G solvation = -14209.997705 eV Core-core repulsion = 11653.259442 eV Total energy + Delta-G solvation = -2556.738262 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.54222 -41.46487 -37.32161 -35.52200 -33.64006 -30.77483 -29.34752 -28.07367 -26.15726 -22.85497 -22.46756 -21.27799 -18.75592 -17.97010 -17.75391 -16.72726 -16.42075 -16.37366 -15.67603 -14.81343 -14.44930 -14.19292 -13.98569 -13.78655 -13.76880 -13.13389 -12.95414 -12.86893 -12.70966 -12.11987 -11.76287 -11.62518 -11.36199 -11.04776 -10.03451 -8.71082 -8.43844 -8.39462 -5.96068 0.35939 0.73642 1.42840 1.44573 1.54133 2.26871 2.34815 2.80579 2.92873 3.54378 3.64381 3.98486 4.14785 4.48272 4.58256 4.69584 4.83425 4.99424 5.07415 5.19972 5.30859 5.43041 5.47079 5.57612 5.86129 5.90612 6.19392 6.47806 6.75448 7.13133 7.18848 7.35220 8.62277 Molecular weight = 219.08amu Principal moments of inertia in cm(-1) A = 0.034862 B = 0.010177 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.981654 B = 2750.714917 C = 3519.809271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.076 4.076 3 C -0.145 4.145 4 C -0.012 4.012 5 C -0.457 4.457 6 H 0.076 0.924 7 C 0.016 3.984 8 N -0.860 5.860 9 Si 0.978 3.022 10 H -0.265 1.265 11 H -0.274 1.274 12 H -0.267 1.267 13 C -0.086 4.086 14 N -0.578 5.578 15 H 0.415 0.585 16 C 0.069 3.931 17 C -0.119 4.119 18 C -0.133 4.133 19 C 0.011 3.989 20 F -0.153 7.153 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.278 0.722 25 H 0.169 0.831 26 H 0.154 0.846 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.233 -5.725 0.931 6.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.078 4.078 3 C -0.152 4.152 4 C -0.018 4.018 5 C -0.490 4.490 6 H 0.094 0.906 7 C -0.191 4.191 8 N -0.492 5.492 9 Si 0.801 3.199 10 H -0.189 1.189 11 H -0.199 1.199 12 H -0.192 1.192 13 C -0.211 4.211 14 N -0.181 5.181 15 H 0.252 0.748 16 C -0.042 4.042 17 C -0.140 4.140 18 C -0.152 4.152 19 C -0.010 4.010 20 F -0.132 7.132 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.186 0.814 26 H 0.172 0.828 27 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.315 -5.388 0.859 6.384 hybrid contribution -0.452 0.588 -0.114 0.751 sum 2.863 -4.800 0.745 5.638 Atomic orbital electron populations 1.20696 0.90707 1.02538 1.02399 1.19410 0.96866 0.90664 1.00833 1.19381 0.93174 0.93697 1.08933 1.18385 0.93796 0.87829 1.01766 1.19045 0.92855 0.96964 1.40147 0.90631 1.26449 1.02478 0.96761 0.93441 1.69708 1.33896 1.07988 1.37560 0.85282 0.77880 0.77384 0.79322 1.18928 1.19912 1.19155 1.22622 0.85086 0.95407 1.17985 1.41311 1.08458 1.03123 1.65165 0.74819 1.18601 0.93484 0.86423 1.05712 1.20031 1.00124 0.87929 1.05933 1.20793 0.91136 0.99301 1.04004 1.17196 0.90705 0.79834 1.13251 1.91351 1.80855 1.45914 1.95118 0.91246 0.91290 0.91098 0.91234 0.81416 0.82849 0.82339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 9.00 71.23 0.64 -3.68 15 2 C -0.08 -3.37 5.91 -19.67 -0.12 -3.49 15 3 C -0.14 -7.06 6.15 -20.04 -0.12 -7.19 15 4 C -0.01 -0.67 6.01 -19.98 -0.12 -0.79 15 5 C -0.46 -24.78 8.44 23.28 0.20 -24.58 15 6 H 0.08 3.94 5.92 -2.91 -0.02 3.92 15 7 C 0.02 0.84 5.48 85.17 0.47 1.31 15 8 N -0.86 -45.19 10.69 21.80 0.23 -44.95 15 9 Si 0.98 39.89 29.56 68.60 2.03 41.92 15 10 H -0.26 -10.50 7.11 99.48 0.71 -9.79 15 11 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 12 H -0.27 -10.67 7.11 99.48 0.71 -9.96 15 13 C -0.09 -4.31 10.79 84.26 0.91 -3.40 15 14 N -0.58 -23.91 5.99 -184.91 -1.11 -25.02 15 15 H 0.41 13.45 8.96 -92.71 -0.83 12.61 15 16 C 0.07 2.93 7.23 38.85 0.28 3.21 15 17 C -0.12 -4.03 10.07 22.39 0.23 -3.80 15 18 C -0.13 -4.41 9.99 22.33 0.22 -4.19 15 19 C 0.01 0.44 7.24 22.38 0.16 0.60 15 20 F -0.15 -5.66 16.38 44.97 0.74 -4.93 15 21 H 0.07 2.67 8.14 -2.39 -0.02 2.65 15 22 H 0.07 3.00 6.10 -2.39 -0.01 2.99 15 23 H 0.07 2.52 7.48 -2.39 -0.02 2.50 15 24 H 0.28 13.47 8.30 -92.71 -0.77 12.70 15 25 H 0.17 8.74 6.21 -2.91 -0.02 8.72 15 26 H 0.15 3.87 8.06 -2.91 -0.02 3.85 15 27 H 0.16 4.02 8.06 -2.91 -0.02 4.00 15 Total: -1.00 -59.83 237.48 5.02 -54.81 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.39 Total: 24.18 kcal Atomic # 6 Polarization: -48.74 SS G_CDS: 2.74 Total: -46.00 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -0.88 Total: -69.97 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.74 Total: -4.93 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -59.83 5.02 -54.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238490079.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.791 kcal (2) G-P(sol) polarization free energy of solvation -59.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds