Wall clock time and date at job start Mon Mar 30 2020 20:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37923 * 119.98595 * 2 1 4 4 C 1.38580 * 120.64551 * 180.27742 * 3 2 1 5 5 C 1.38182 * 120.21980 * 359.50903 * 4 3 2 6 6 F 1.35102 * 120.17854 * 180.23755 * 5 4 3 7 7 C 1.39344 * 119.64465 * 0.46394 * 5 4 3 8 8 C 1.47646 * 133.77741 * 179.78353 * 7 5 4 9 9 C 1.40892 * 126.93280 * 359.97438 * 8 7 5 10 10 H 1.08001 * 119.99576 * 359.97438 * 9 8 7 11 11 C 1.39715 * 119.99934 * 179.97438 * 9 8 7 12 12 N 1.31059 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86809 * 119.99918 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46762 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46802 * 120.00262 * 13 11 9 16 16 H 1.48495 * 109.47242 * 240.00117 * 13 11 9 17 17 C 1.38919 * 106.13554 * 180.02562 * 8 7 5 18 18 N 1.35648 * 109.27356 * 0.02562 * 17 8 7 19 19 H 0.97005 * 124.68528 * 180.02562 * 18 17 8 20 20 C 1.38137 * 110.62314 * 0.02562 * 18 17 8 21 21 H 1.09001 * 109.46972 * 90.00043 * 1 2 3 22 22 H 1.08994 * 109.47523 * 209.99724 * 1 2 3 23 23 H 1.09003 * 109.47331 * 330.00436 * 1 2 3 24 24 H 1.08002 * 119.67359 * 359.97438 * 3 2 1 25 25 H 1.08004 * 119.88768 * 179.74393 * 4 3 2 26 26 H 0.97003 * 120.00104 * 179.97438 * 12 11 9 27 27 H 1.07998 * 125.36233 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1946 0.0000 4 6 3.5820 1.2106 -0.0058 5 6 4.2913 0.0247 -0.0014 6 9 5.6422 0.0412 -0.0022 7 6 3.6056 -1.1884 -0.0009 8 6 4.0311 -2.6023 -0.0009 9 6 5.3535 -3.0884 -0.0019 10 1 6.1830 -2.3968 -0.0033 11 6 5.5917 -4.4651 -0.0012 12 7 4.5850 -5.3043 -0.0001 13 14 7.3450 -5.1097 -0.0033 14 1 8.2927 -3.9663 -0.0049 15 1 7.5698 -5.9366 1.2095 16 1 7.5664 -5.9384 -1.2155 17 6 2.8645 -3.3565 -0.0009 18 7 1.7933 -2.5243 -0.0015 19 1 0.8680 -2.8156 -0.0012 20 6 2.2022 -1.2049 -0.0025 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5137 23 1 -0.3634 0.8900 0.5138 24 1 1.6508 2.1267 -0.0004 25 1 4.1094 2.1531 -0.0099 26 1 4.7504 -6.2602 0.0000 27 1 2.8178 -4.4355 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238494343.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:30 Heat of formation + Delta-G solvation = -8.774137 kcal Electronic energy + Delta-G solvation = -14199.299282 eV Core-core repulsion = 11643.135209 eV Total energy + Delta-G solvation = -2556.164073 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.79663 -39.76307 -35.92593 -33.52958 -31.88553 -29.31514 -27.82886 -25.70980 -24.84777 -21.27927 -20.78539 -19.37935 -17.52935 -15.92855 -15.61389 -15.12783 -14.62326 -14.23669 -14.14672 -13.55795 -13.40139 -12.69808 -12.54175 -12.32018 -11.57418 -11.49252 -11.21029 -11.16381 -10.73928 -10.66238 -10.27020 -9.84109 -9.65900 -9.42164 -8.18955 -7.17494 -6.60485 -6.52717 -4.02889 1.98551 2.44374 3.08447 3.18258 3.26062 4.08997 4.13586 4.43656 4.57758 5.32185 5.45736 5.53273 5.60186 5.81084 5.92245 5.95323 6.13854 6.46295 6.53166 6.70506 7.05261 7.11860 7.20625 7.33028 7.54163 7.79382 7.98796 8.25595 8.60763 8.97068 9.10000 9.14411 10.45151 Molecular weight = 219.08amu Principal moments of inertia in cm(-1) A = 0.037855 B = 0.010051 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.478343 B = 2785.206164 C = 3509.540653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.133 4.133 3 C -0.092 4.092 4 C -0.226 4.226 5 C 0.153 3.847 6 F -0.145 7.145 7 C -0.166 4.166 8 C 0.026 3.974 9 C -0.413 4.413 10 H 0.077 0.923 11 C 0.055 3.945 12 N -0.833 5.833 13 Si 0.918 3.082 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.097 4.097 18 N -0.580 5.580 19 H 0.396 0.604 20 C 0.108 3.892 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.273 0.727 27 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.139 5.332 -0.015 7.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.137 4.137 3 C -0.112 4.112 4 C -0.247 4.247 5 C 0.133 3.867 6 F -0.123 7.123 7 C -0.174 4.174 8 C 0.021 3.979 9 C -0.446 4.446 10 H 0.095 0.905 11 C -0.155 4.155 12 N -0.463 5.463 13 Si 0.744 3.256 14 H -0.187 1.187 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.221 4.221 18 N -0.180 5.180 19 H 0.230 0.770 20 C -0.005 4.005 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.133 0.867 25 H 0.134 0.866 26 H 0.084 0.916 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.143 4.913 -0.015 7.112 hybrid contribution 0.615 -0.471 -0.001 0.774 sum -4.528 4.442 -0.016 6.343 Atomic orbital electron populations 1.20538 0.92404 1.01509 1.01086 1.18683 0.94488 0.90662 1.09864 1.20081 0.92786 0.95846 1.02456 1.20426 0.94484 0.95682 1.14119 1.17146 0.75870 0.92989 1.00670 1.91403 1.29865 1.97411 1.93663 1.19360 0.92675 0.93920 1.11432 1.18036 0.93410 0.85998 1.00411 1.18907 0.91873 0.91522 1.42282 0.90507 1.25666 0.98955 0.96695 0.94191 1.69439 1.31689 1.03445 1.41768 0.86073 0.82344 0.79097 0.78099 1.18711 1.20284 1.20280 1.23394 0.83508 0.96383 1.18832 1.41575 1.08287 1.03585 1.64550 0.77024 1.17708 0.92530 0.85132 1.05095 0.92373 0.92980 0.92182 0.86668 0.86554 0.91578 0.78863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 10.01 36.01 0.36 -1.04 15 2 C -0.13 -2.50 5.90 -104.41 -0.62 -3.11 15 3 C -0.09 -1.64 9.66 -39.57 -0.38 -2.03 15 4 C -0.23 -4.43 10.02 -39.48 -0.40 -4.82 15 5 C 0.15 3.59 7.33 -39.19 -0.29 3.30 15 6 F -0.14 -3.47 16.50 2.25 0.04 -3.43 15 7 C -0.17 -4.21 6.31 -104.85 -0.66 -4.88 15 8 C 0.03 0.73 6.10 -104.80 -0.64 0.09 15 9 C -0.41 -11.61 9.35 -38.03 -0.36 -11.97 15 10 H 0.08 2.16 7.13 -52.49 -0.37 1.78 15 11 C 0.05 1.44 5.49 -17.33 -0.10 1.34 15 12 N -0.83 -21.76 10.33 55.54 0.57 -21.18 15 13 Si 0.92 20.00 29.56 -169.99 -5.02 14.98 15 14 H -0.26 -5.75 7.11 56.52 0.40 -5.35 15 15 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 17 C -0.10 -2.46 10.89 -15.61 -0.17 -2.63 15 18 N -0.58 -12.49 5.99 -9.81 -0.06 -12.55 15 19 H 0.40 6.91 8.75 -40.82 -0.36 6.55 15 20 C 0.11 2.42 6.90 -83.91 -0.58 1.84 15 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.05 0.70 7.87 -51.93 -0.41 0.29 15 23 H 0.06 0.73 8.08 -51.93 -0.42 0.31 15 24 H 0.12 1.64 8.06 -52.49 -0.42 1.22 15 25 H 0.12 1.96 8.06 -52.48 -0.42 1.54 15 26 H 0.27 6.55 8.30 -40.82 -0.34 6.21 15 27 H 0.20 5.02 5.68 -52.49 -0.30 4.72 15 LS Contribution 241.73 15.07 3.64 3.64 Total: -1.00 -28.95 241.73 -6.91 -35.86 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -2.26 Total: 6.58 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -3.82 Total: -23.90 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.52 Total: -33.73 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.04 Total: -3.43 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.95 -6.91 -35.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238494343.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.087 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds