Wall clock time and date at job start Mon Mar 30 2020 20:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31638 * 118.89202 * 2 1 4 4 C 1.33050 * 120.44342 * 180.02562 * 3 2 1 5 5 C 1.47337 * 134.69580 * 179.97438 * 4 3 2 6 6 C 1.41002 * 126.90476 * 0.02562 * 5 4 3 7 7 H 1.08006 * 119.99545 * 0.02562 * 6 5 4 8 8 C 1.39764 * 120.00327 * 179.97438 * 6 5 4 9 9 N 1.31030 * 119.99889 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00010 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46998 * 90.00540 * 10 8 6 12 12 H 1.48508 * 109.46788 * 210.00213 * 10 8 6 13 13 H 1.48494 * 109.47450 * 330.00276 * 10 8 6 14 14 C 1.39011 * 106.19038 * 180.02562 * 5 4 3 15 15 N 1.35452 * 109.26582 * 359.97438 * 14 5 4 16 16 H 0.96998 * 124.73666 * 179.97438 * 15 14 5 17 17 C 1.37938 * 110.54056 * 0.02562 * 15 14 5 18 18 C 1.39792 * 133.95860 * 179.97438 * 17 15 14 19 19 O 1.35534 * 120.66877 * 0.02562 * 18 17 15 20 20 N 1.32042 * 118.88940 * 180.25622 * 2 1 3 21 21 H 1.08998 * 109.47251 * 90.00032 * 1 2 3 22 22 H 1.08997 * 109.47240 * 210.00712 * 1 2 3 23 23 H 1.09004 * 109.47170 * 330.00461 * 1 2 3 24 24 H 0.97003 * 120.00355 * 179.97438 * 9 8 6 25 25 H 1.08008 * 125.36871 * 179.97438 * 14 5 4 26 26 H 0.96700 * 114.00259 * 89.99935 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1431 1.1525 0.0000 4 6 3.4731 1.1886 -0.0005 5 6 4.4806 2.2636 -0.0011 6 6 4.2370 3.6524 -0.0009 7 1 3.2223 4.0226 0.0003 8 6 5.3083 4.5499 -0.0010 9 7 6.5393 4.1008 -0.0019 10 14 4.9854 6.3898 -0.0014 11 1 4.9000 6.8776 1.3986 12 1 6.0942 7.0868 -0.7016 13 1 3.7057 6.6677 -0.7014 14 6 5.7197 1.6335 -0.0021 15 7 5.5385 0.2911 -0.0015 16 1 6.2545 -0.3632 -0.0023 17 6 4.1937 -0.0157 -0.0007 18 6 3.4715 -1.2126 -0.0004 19 8 4.1125 -2.4068 -0.0003 20 7 2.1450 -1.1561 -0.0052 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3634 0.8901 0.5138 24 1 7.2829 4.7236 -0.0024 25 1 6.6762 2.1352 -0.0031 26 1 4.2987 -2.7532 0.8831 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238526252.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:35 Heat of formation + Delta-G solvation = 2.373060 kcal Electronic energy + Delta-G solvation = -14155.876684 eV Core-core repulsion = 11620.115951 eV Total energy + Delta-G solvation = -2535.760732 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.41292 -39.46749 -38.46534 -35.55578 -33.66496 -32.26669 -31.03616 -28.35405 -27.11333 -24.39244 -23.06548 -21.59926 -19.98013 -19.49047 -18.05225 -17.42552 -17.12025 -16.42476 -15.71879 -15.33350 -14.69462 -14.48434 -14.40450 -13.59363 -13.23137 -12.98997 -12.95806 -12.79424 -12.71201 -12.07195 -11.82616 -11.79643 -11.67728 -11.11258 -10.00346 -9.28511 -9.02660 -8.52661 -6.11568 -0.01265 0.42259 1.38813 1.44231 1.57002 2.08791 2.27345 2.37518 2.62449 2.91218 3.35758 3.46559 3.70413 4.07999 4.35987 4.70543 4.85188 4.95413 4.98851 5.18133 5.38565 5.63005 5.77070 6.05519 6.23890 6.50010 6.63114 6.88700 7.00769 7.08895 7.47751 8.47048 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.037578 B = 0.009222 C = 0.007439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.933693 B = 3035.561825 C = 3762.794316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.245 3.755 3 N -0.500 5.500 4 C 0.063 3.937 5 C -0.011 4.011 6 C -0.444 4.444 7 H 0.063 0.937 8 C 0.020 3.980 9 N -0.847 5.847 10 Si 0.991 3.009 11 H -0.265 1.265 12 H -0.265 1.265 13 H -0.269 1.269 14 C -0.060 4.060 15 N -0.543 5.543 16 H 0.423 0.577 17 C -0.047 4.047 18 C 0.347 3.653 19 O -0.476 6.476 20 N -0.537 5.537 21 H 0.086 0.914 22 H 0.095 0.905 23 H 0.083 0.917 24 H 0.287 0.713 25 H 0.204 0.796 26 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.566 -5.584 1.827 6.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.024 4.024 3 N -0.215 5.215 4 C -0.079 4.079 5 C -0.017 4.017 6 C -0.476 4.476 7 H 0.081 0.919 8 C -0.189 4.189 9 N -0.478 5.478 10 Si 0.813 3.187 11 H -0.190 1.190 12 H -0.189 1.189 13 H -0.193 1.193 14 C -0.191 4.191 15 N -0.145 5.145 16 H 0.261 0.739 17 C -0.166 4.166 18 C 0.148 3.852 19 O -0.285 6.285 20 N -0.264 5.264 21 H 0.104 0.896 22 H 0.114 0.886 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.220 0.780 26 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -2.164 -5.393 1.227 5.939 hybrid contribution 1.331 0.297 0.421 1.427 sum -0.832 -5.096 1.648 5.420 Atomic orbital electron populations 1.20413 0.83256 1.04244 1.04005 1.23300 0.98920 0.81494 0.98703 1.67426 1.08998 1.30895 1.14217 1.20736 0.89111 0.93814 1.04192 1.18378 0.88268 0.92054 1.03005 1.18977 0.94150 0.89999 1.44515 0.91850 1.26468 0.93887 1.05580 0.92953 1.69357 0.99829 1.38071 1.40506 0.85037 0.78729 0.75797 0.79149 1.19037 1.18924 1.19342 1.23540 1.00631 0.79718 1.15163 1.41142 1.03532 1.07681 1.62173 0.73899 1.19951 0.87745 0.96169 1.12685 1.18396 0.86567 0.83022 0.97243 1.84681 1.75415 1.32783 1.35586 1.67613 1.07969 1.31596 1.19176 0.89555 0.88591 0.89780 0.90190 0.78021 0.72197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.84 10.31 71.24 0.73 -1.10 15 2 C 0.25 10.34 7.64 138.72 1.06 11.40 15 3 N -0.50 -24.91 10.38 -177.36 -1.84 -26.75 15 4 C 0.06 3.30 7.54 41.87 0.32 3.61 15 5 C -0.01 -0.60 6.10 -20.02 -0.12 -0.73 15 6 C -0.44 -24.89 9.43 23.32 0.22 -24.67 15 7 H 0.06 3.62 7.84 -2.91 -0.02 3.60 15 8 C 0.02 1.01 5.49 85.18 0.47 1.47 15 9 N -0.85 -42.03 10.33 21.80 0.23 -41.81 15 10 Si 0.99 39.30 29.56 68.60 2.03 41.33 15 11 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 12 H -0.26 -9.79 7.11 99.48 0.71 -9.09 15 13 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 14 C -0.06 -2.91 10.88 84.32 0.92 -2.00 15 15 N -0.54 -22.43 5.98 -184.63 -1.10 -23.53 15 16 H 0.42 13.57 8.96 -92.71 -0.83 12.74 15 17 C -0.05 -2.11 7.26 39.07 0.28 -1.82 15 18 C 0.35 13.90 7.87 84.93 0.67 14.56 15 19 O -0.48 -14.63 13.58 -88.38 -1.20 -15.83 15 20 N -0.54 -22.07 10.32 -300.31 -3.10 -25.17 15 21 H 0.09 2.34 8.14 -2.39 -0.02 2.32 15 22 H 0.10 2.43 8.14 -2.39 -0.02 2.41 15 23 H 0.08 2.41 8.14 -2.39 -0.02 2.39 15 24 H 0.29 12.85 8.30 -92.71 -0.77 12.08 15 25 H 0.20 9.88 5.68 -2.91 -0.02 9.87 15 26 H 0.42 8.02 9.06 -74.06 -0.67 7.35 15 Total: -1.00 -66.23 238.26 -0.70 -66.92 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.25 Total: 24.10 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 4.54 Total: 0.74 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -5.82 Total: -117.27 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.20 Total: -15.83 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -66.23 -0.70 -66.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238526252.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.297 kcal (2) G-P(sol) polarization free energy of solvation -66.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds