Wall clock time and date at job start Mon Mar 30 2020 20:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00208 * 2 1 4 4 H 1.48498 * 109.47132 * 270.00450 * 3 2 1 5 5 H 1.48506 * 109.46822 * 30.00256 * 3 2 1 6 6 H 1.48492 * 109.47116 * 149.99878 * 3 2 1 7 7 C 1.37878 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00145 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99761 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.29729 * 59.74195 * 9 7 2 11 11 C 1.53036 * 109.38833 * 300.00163 * 9 7 2 12 12 S 1.81668 * 108.99873 * 176.19550 * 11 9 7 13 13 O 1.42097 * 108.66427 * 168.63105 * 12 11 9 14 14 O 1.42102 * 108.66490 * 299.87458 * 12 11 9 15 15 C 1.81667 * 101.30862 * 54.30018 * 12 11 9 16 16 C 1.53040 * 108.99671 * 305.70129 * 15 12 11 17 17 C 1.52587 * 109.38223 * 179.47808 * 9 7 2 18 18 H 1.09006 * 109.24309 * 310.44875 * 17 9 7 19 19 N 1.46904 * 109.24543 * 69.84733 * 17 9 7 20 20 H 0.97002 * 119.99917 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.55030 * 296.05338 * 11 9 7 22 22 H 1.09006 * 109.54664 * 56.24416 * 11 9 7 23 23 H 1.08997 * 109.55242 * 65.55426 * 15 12 11 24 24 H 1.08999 * 109.55329 * 185.84576 * 15 12 11 25 25 H 1.09000 * 109.38264 * 183.80582 * 16 15 12 26 26 H 1.08997 * 109.38968 * 303.48819 * 16 15 12 27 27 H 1.00900 * 111.00285 * 180.02562 * 19 17 9 28 28 H 1.00900 * 110.99715 * 303.95305 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.8720 -0.6750 0.8881 11 6 4.0190 -0.4730 -1.2509 12 16 5.8321 -0.3798 -1.1850 13 8 6.3119 0.0455 -2.4531 14 8 6.2083 0.3432 -0.0210 15 6 6.2706 -2.1276 -0.9539 16 6 5.5225 -2.6718 0.2652 17 6 4.0179 -2.6333 0.0138 18 1 3.5076 -3.1862 0.8026 19 7 3.7274 -3.2614 -1.2820 20 1 -0.4850 0.8401 0.0004 21 1 3.7142 -1.0259 -2.1395 22 1 3.6016 0.5333 -1.2864 23 1 5.9860 -2.6953 -1.8398 24 1 7.3448 -2.2158 -0.7920 25 1 5.8322 -3.7004 0.4502 26 1 5.7593 -2.0620 1.1370 27 1 4.0517 -4.2167 -1.3017 28 1 2.7427 -3.2097 -1.4962 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257847209.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:47 Heat of formation + Delta-G solvation = -69.567330 kcal Electronic energy + Delta-G solvation = -14069.299357 eV Core-core repulsion = 11633.570255 eV Total energy + Delta-G solvation = -2435.729102 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 219.072 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.83108 -36.32391 -35.44739 -33.19160 -31.13508 -30.60099 -26.28202 -25.24125 -22.23380 -19.24133 -18.09603 -17.07685 -16.32693 -15.82492 -15.28979 -15.07025 -15.02305 -14.29430 -13.27074 -12.98024 -12.83130 -12.61056 -11.92357 -11.57064 -11.51429 -11.42827 -11.31091 -11.07011 -10.65193 -10.39618 -10.22867 -10.00169 -9.45406 -8.94712 -8.74912 -8.21497 -6.27652 -4.28321 0.67758 3.12802 3.26814 3.30863 3.35186 4.19036 4.25774 4.50607 4.94028 5.01152 5.07120 5.21778 5.40811 5.60576 5.69010 5.80049 5.93915 6.19736 6.28945 6.33827 6.65873 7.05870 7.46406 7.64313 7.98061 8.25016 8.71349 9.33976 10.84146 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.032379 B = 0.015711 C = 0.012134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.560469 B = 1781.808138 C = 2307.079942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.079 3.921 3 Si 0.849 3.151 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.508 4.508 8 H 0.079 0.921 9 C 0.031 3.969 10 H 0.052 0.948 11 C -0.565 4.565 12 S 2.380 3.620 13 O -0.969 6.969 14 O -0.956 6.956 15 C -0.585 4.585 16 C -0.104 4.104 17 C 0.089 3.911 18 H 0.053 0.947 19 N -0.848 5.848 20 H 0.268 0.732 21 H 0.144 0.856 22 H 0.107 0.893 23 H 0.142 0.858 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.327 0.673 28 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.854 -5.744 -0.964 10.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.677 3.323 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.170 1.170 7 C -0.547 4.547 8 H 0.097 0.903 9 C 0.011 3.989 10 H 0.070 0.930 11 C -0.698 4.698 12 S 2.568 3.432 13 O -0.966 6.966 14 O -0.953 6.953 15 C -0.715 4.715 16 C -0.143 4.143 17 C -0.022 4.022 18 H 0.071 0.929 19 N -0.379 5.379 20 H 0.078 0.922 21 H 0.162 0.838 22 H 0.124 0.876 23 H 0.160 0.840 24 H 0.133 0.867 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.138 0.862 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.783 -4.301 -1.338 10.770 hybrid contribution -0.736 -0.329 0.396 0.898 sum 9.048 -4.629 -0.942 10.207 Atomic orbital electron populations 1.69856 1.06228 1.27404 1.49114 1.24957 0.94655 0.98963 0.93878 0.87357 0.81784 0.84301 0.78848 1.19855 1.21190 1.16989 1.20765 0.87453 0.94618 1.51870 0.90294 1.19026 0.98862 0.90307 0.90740 0.93027 1.30531 1.18606 1.09234 1.11454 1.08969 0.81003 0.78395 0.74835 1.93501 1.80314 1.80315 1.42427 1.93523 1.82612 1.69098 1.50039 1.29919 1.08102 1.24934 1.08509 1.21396 0.95070 1.02414 0.95418 1.21332 0.92567 0.97225 0.91096 0.92857 1.58860 1.25328 1.21655 1.32089 0.92246 0.83832 0.87559 0.84025 0.86745 0.90856 0.89998 0.86151 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 13.96 55.43 0.77 -24.81 15 2 C 0.08 2.14 5.45 -17.82 -0.10 2.05 15 3 Si 0.85 20.73 24.40 -169.99 -4.15 16.58 15 4 H -0.27 -6.45 6.83 56.52 0.39 -6.07 15 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 6 H -0.25 -5.87 6.52 56.52 0.37 -5.50 15 7 C -0.51 -12.68 8.44 -34.44 -0.29 -12.97 15 8 H 0.08 2.07 7.67 -52.49 -0.40 1.67 15 9 C 0.03 0.64 1.36 -91.96 -0.12 0.52 15 10 H 0.05 1.12 7.05 -51.93 -0.37 0.76 15 11 C -0.57 -11.42 4.92 37.18 0.18 -11.23 15 12 S 2.38 44.05 5.30 -107.50 -0.57 43.48 15 13 O -0.97 -20.10 18.10 -57.82 -1.05 -21.14 15 14 O -0.96 -20.39 17.96 -57.82 -1.04 -21.43 15 15 C -0.58 -8.13 6.16 37.18 0.23 -7.90 15 16 C -0.10 -1.45 5.47 -26.92 -0.15 -1.60 15 17 C 0.09 1.46 2.87 -68.13 -0.20 1.26 15 18 H 0.05 0.88 8.09 -51.93 -0.42 0.46 15 19 N -0.85 -12.25 6.79 -5.02 -0.03 -12.28 15 20 H 0.27 7.30 8.31 -40.82 -0.34 6.96 15 21 H 0.14 2.67 7.25 -51.93 -0.38 2.30 15 22 H 0.11 2.35 3.22 -51.92 -0.17 2.18 15 23 H 0.14 1.80 7.25 -51.93 -0.38 1.42 15 24 H 0.11 1.33 8.14 -51.93 -0.42 0.90 15 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 15 26 H 0.08 1.15 8.02 -51.93 -0.42 0.74 15 27 H 0.33 3.76 9.02 -39.29 -0.35 3.40 15 28 H 0.36 5.67 8.03 -39.29 -0.32 5.35 15 LS Contribution 231.85 15.07 3.49 3.49 Total: -1.00 -31.33 231.85 -6.24 -37.57 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.22 Total: 8.42 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: -0.44 Total: -29.87 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.74 Total: -37.10 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -2.08 Total: -42.57 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.15 Total: 16.58 kcal Atomic # 16 Polarization: 44.05 SS G_CDS: -0.57 Total: 43.48 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -31.33 -6.24 -37.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257847209.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.999 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds