Wall clock time and date at job start Mon Mar 30 2020 20:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35532 * 117.00236 * 2 1 4 4 C 1.38190 * 119.99743 * 359.97438 * 3 2 1 5 5 C 1.38698 * 120.30008 * 179.97438 * 4 3 2 6 6 O 1.35516 * 119.86270 * 179.97438 * 5 4 3 7 7 C 1.40892 * 120.28226 * 0.02562 * 5 4 3 8 8 C 1.43196 * 120.00334 * 179.97438 * 7 5 4 9 9 N 6.71796 * 116.85550 * 359.97438 * 2 1 3 10 10 C 1.38983 * 119.98857 * 359.97438 * 7 5 4 11 11 C 1.40392 * 119.70853 * 359.74330 * 10 7 5 12 12 C 1.41096 * 120.14446 * 180.25268 * 11 10 7 13 13 H 1.07998 * 120.00430 * 205.04556 * 12 11 10 14 14 C 1.39857 * 119.99957 * 25.04795 * 12 11 10 15 15 N 1.30927 * 120.00031 * 17.67428 * 14 12 11 16 16 Si 1.86801 * 119.99975 * 197.66879 * 14 12 11 17 17 H 1.48504 * 109.46966 * 59.99982 * 16 14 12 18 18 H 1.48497 * 109.47275 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47505 * 299.99985 * 16 14 12 20 20 H 1.08992 * 109.46996 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.46729 * 60.00057 * 1 2 3 22 22 H 1.08995 * 109.46577 * 299.99930 * 1 2 3 23 23 H 1.08003 * 119.84950 * 359.95354 * 4 3 2 24 24 H 0.96701 * 113.99737 * 89.99745 * 6 5 4 25 25 H 1.08005 * 120.14878 * 179.97438 * 10 7 5 26 26 H 0.97002 * 120.00048 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2076 0.0000 4 6 1.2918 2.3665 -0.0005 5 6 1.9149 3.6056 0.0000 6 8 1.1682 4.7365 -0.0011 7 6 3.3211 3.6937 0.0005 8 6 3.9583 4.9760 0.0005 9 7 4.4638 5.9934 -0.0027 10 6 4.0896 2.5356 0.0011 11 6 3.4584 1.2817 0.0066 12 6 4.2297 0.1002 0.0125 13 1 3.8156 -0.8171 -0.3794 14 6 5.5304 0.1168 0.5261 15 7 5.9153 1.0984 1.3023 16 14 6.7187 -1.2615 0.1045 17 1 6.9144 -1.3138 -1.3666 18 1 8.0232 -1.0108 0.7683 19 1 6.1634 -2.5555 0.5762 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3632 0.5138 0.8900 23 1 0.2134 2.3072 -0.0017 24 1 0.9504 5.0648 0.8821 25 1 5.1678 2.6001 0.0011 26 1 6.8176 1.1101 1.6582 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258140963.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:53 Heat of formation + Delta-G solvation = -54.933258 kcal Electronic energy + Delta-G solvation = -14062.138710 eV Core-core repulsion = 11491.600238 eV Total energy + Delta-G solvation = -2570.538472 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.82081 -39.08696 -37.46335 -36.99208 -34.97959 -31.42723 -31.03438 -28.11872 -26.76362 -23.74910 -23.06608 -20.10684 -19.41109 -18.41918 -17.45551 -17.35069 -16.33630 -16.24991 -15.48248 -15.06141 -14.72307 -14.63066 -14.50012 -13.79116 -13.60681 -13.51271 -12.84650 -12.79665 -12.74064 -12.17100 -12.13829 -11.59452 -11.44522 -11.39210 -10.98034 -9.45613 -9.02163 -8.63303 -6.24185 0.22025 0.77213 1.44559 1.50031 1.56447 1.76159 2.12610 2.25188 2.71605 2.80795 3.20758 3.46931 3.65849 4.24577 4.48993 4.57119 4.73077 4.84653 4.97743 5.22829 5.27211 5.36288 5.55917 5.75654 6.00557 6.33717 6.54623 6.71320 6.81716 6.95305 7.15416 8.31184 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.022666 B = 0.012087 C = 0.008082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.033919 B = 2315.928498 C = 3463.501600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.327 6.327 3 C 0.060 3.940 4 C -0.197 4.197 5 C 0.063 3.937 6 O -0.500 6.500 7 C -0.080 4.080 8 C 0.296 3.704 9 N -0.485 5.485 10 C -0.103 4.103 11 C 0.057 3.943 12 C -0.466 4.466 13 H 0.084 0.916 14 C 0.035 3.965 15 N -0.823 5.823 16 Si 0.979 3.021 17 H -0.261 1.261 18 H -0.271 1.271 19 H -0.259 1.259 20 H 0.115 0.885 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.148 0.852 24 H 0.391 0.609 25 H 0.120 0.880 26 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.903 -3.753 -0.120 7.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.241 6.241 3 C 0.013 3.987 4 C -0.216 4.216 5 C 0.015 3.985 6 O -0.311 6.311 7 C -0.085 4.085 8 C -0.017 4.017 9 N -0.163 5.163 10 C -0.126 4.126 11 C 0.054 3.946 12 C -0.495 4.495 13 H 0.102 0.898 14 C -0.180 4.180 15 N -0.449 5.449 16 Si 0.801 3.199 17 H -0.185 1.185 18 H -0.196 1.196 19 H -0.183 1.183 20 H 0.133 0.867 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.166 0.834 24 H 0.248 0.752 25 H 0.138 0.862 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.820 -2.349 -0.580 6.303 hybrid contribution 0.222 -0.525 0.533 0.780 sum -5.598 -2.874 -0.047 6.293 Atomic orbital electron populations 1.23229 0.77857 1.04796 1.01602 1.85953 1.22102 1.26992 1.89045 1.19308 0.91746 0.83987 1.03641 1.20988 1.00173 0.90429 1.10052 1.17565 0.86099 0.85735 1.09131 1.84695 1.71619 1.40516 1.34239 1.16402 0.92598 0.85903 1.13601 1.25980 0.91682 0.92485 0.91540 1.81036 1.10412 1.12378 1.12488 1.20914 0.98967 0.89321 1.03404 1.17194 0.88858 0.93808 0.94737 1.19561 0.97963 0.96553 1.35455 0.89794 1.26696 0.99984 0.99419 0.91911 1.69846 1.20242 1.32340 1.22474 0.85266 0.76693 0.78311 0.79673 1.18490 1.19605 1.18273 0.86726 0.92372 0.92354 0.83420 0.75234 0.86235 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.80 113.37 1.11 1.63 15 2 O -0.33 -12.89 9.75 -88.36 -0.86 -13.76 15 3 C 0.06 2.59 6.72 23.09 0.16 2.75 15 4 C -0.20 -7.49 8.94 22.37 0.20 -7.29 15 5 C 0.06 2.51 6.72 23.03 0.15 2.66 15 6 O -0.50 -17.18 12.90 -88.18 -1.14 -18.32 15 7 C -0.08 -3.59 5.75 -21.21 -0.12 -3.71 15 8 C 0.30 13.14 14.84 88.33 1.31 14.45 15 9 N -0.49 -21.89 18.54 19.00 0.35 -21.54 15 10 C -0.10 -5.05 8.37 22.97 0.19 -4.86 15 11 C 0.06 2.80 5.58 -21.23 -0.12 2.69 15 12 C -0.47 -23.32 8.70 23.36 0.20 -23.11 15 13 H 0.08 4.12 7.63 -2.91 -0.02 4.10 15 14 C 0.04 1.66 5.13 85.22 0.44 2.09 15 15 N -0.82 -40.57 10.98 21.82 0.24 -40.34 15 16 Si 0.98 36.31 29.59 68.60 2.03 38.34 15 17 H -0.26 -9.50 7.11 99.48 0.71 -8.80 15 18 H -0.27 -9.66 7.11 99.48 0.71 -8.95 15 19 H -0.26 -9.28 7.11 99.48 0.71 -8.58 15 20 H 0.11 2.33 8.14 -2.39 -0.02 2.31 15 21 H 0.06 1.37 7.65 -2.39 -0.02 1.36 15 22 H 0.06 1.37 7.65 -2.39 -0.02 1.36 15 23 H 0.15 4.56 6.25 -2.91 -0.02 4.54 15 24 H 0.39 9.76 9.06 -74.06 -0.67 9.08 15 25 H 0.12 6.19 6.18 -2.91 -0.02 6.17 15 26 H 0.29 13.12 8.30 -92.71 -0.77 12.35 15 Total: -1.00 -58.08 244.48 4.71 -53.37 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.57 Total: 14.94 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 3.52 Total: -12.69 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: 0.59 Total: -61.88 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -2.00 Total: -32.07 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Total: -58.08 4.71 -53.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258140963.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.564 kcal (2) G-P(sol) polarization free energy of solvation -58.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds