Wall clock time and date at job start Mon Mar 30 2020 20:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47901 * 111.00213 * 2 1 4 4 C 1.53986 * 107.05796 * 145.84745 * 3 2 1 5 5 C 1.54599 * 105.13992 * 358.77597 * 4 3 2 6 6 H 1.09002 * 110.72268 * 96.57808 * 5 4 3 7 7 S 1.81395 * 110.72213 * 219.68347 * 5 4 3 8 8 O 1.42105 * 110.54530 * 291.62515 * 7 5 4 9 9 O 1.42101 * 110.54333 * 68.37687 * 7 5 4 10 10 C 1.76198 * 104.44778 * 180.02562 * 7 5 4 11 11 H 1.07998 * 120.00076 * 359.97438 * 10 7 5 12 12 C 1.37884 * 120.00299 * 179.97438 * 10 7 5 13 13 N 1.31516 * 119.99566 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 120.00197 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.47089 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46844 * 120.00242 * 14 12 10 17 17 H 1.48500 * 109.47062 * 240.00246 * 14 12 10 18 18 C 1.48524 * 111.00049 * 117.40084 * 2 1 3 19 19 H 1.09004 * 109.47729 * 60.11988 * 1 2 3 20 20 H 1.08997 * 109.47597 * 180.12856 * 1 2 3 21 21 H 1.09005 * 109.46963 * 300.12610 * 1 2 3 22 22 H 1.09001 * 109.91266 * 26.49035 * 3 2 1 23 23 H 1.09007 * 110.08002 * 265.29528 * 3 2 1 24 24 H 1.09003 * 110.30834 * 239.85945 * 4 3 2 25 25 H 1.09008 * 110.30848 * 117.69165 * 4 3 2 26 26 H 0.97000 * 119.99840 * 179.97438 * 13 12 10 27 27 H 1.08998 * 110.67079 * 81.84445 * 18 2 1 28 28 H 1.08993 * 110.66862 * 318.70727 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2983 1.3658 0.8264 5 6 3.4492 -0.0931 1.3152 6 1 4.1140 -0.6533 0.6578 7 16 4.0536 -0.1379 3.0249 8 8 5.3964 0.3223 3.0914 9 8 3.0644 0.3576 3.9167 10 6 4.1638 -1.8543 3.4074 11 1 3.8904 -2.5913 2.6667 12 6 4.5990 -2.2568 4.6523 13 7 4.9314 -1.3594 5.5544 14 14 4.7151 -4.0765 5.0580 15 1 4.2863 -4.8743 3.8812 16 1 6.1186 -4.4182 5.4025 17 1 3.8332 -4.3835 6.2127 18 6 2.0013 -0.6381 1.2310 19 1 -0.3635 0.5120 -0.8911 20 1 -0.3634 -1.0276 0.0023 21 1 -0.3633 0.5158 0.8889 22 1 1.2758 2.0561 0.4571 23 1 2.2116 1.7001 -1.0204 24 1 3.2137 2.0428 1.6766 25 1 4.1471 1.6454 0.2022 26 1 5.2373 -1.6425 6.4303 27 1 2.0041 -1.7235 1.1314 28 1 1.4238 -0.3323 2.1034 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258945316.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:56 Heat of formation + Delta-G solvation = -80.723498 kcal Electronic energy + Delta-G solvation = -13606.697408 eV Core-core repulsion = 11170.484539 eV Total energy + Delta-G solvation = -2436.212869 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 219.072 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.49614 -35.08849 -34.07270 -33.01560 -31.99109 -28.81340 -26.06476 -25.50149 -21.20218 -20.86657 -18.41504 -17.04885 -16.11624 -15.79568 -14.99686 -14.38548 -13.91286 -13.76860 -13.56270 -13.38216 -12.72033 -12.03905 -11.62424 -11.47178 -11.39721 -11.20670 -11.12065 -11.04995 -10.56062 -10.54377 -10.27684 -10.18869 -9.32571 -9.20034 -8.65670 -8.28575 -6.64413 -5.26961 1.88731 3.08283 3.15748 3.22662 4.05676 4.25554 4.56986 4.70242 4.78149 5.16895 5.34426 5.46691 5.54978 5.56567 5.69093 5.77852 5.87169 5.91233 5.95590 6.11462 6.25421 6.26800 6.74623 6.96460 7.18279 7.34636 7.97386 8.93334 10.30150 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.042347 B = 0.010513 C = 0.009213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.040653 B = 2662.763111 C = 3038.364764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.521 5.521 3 C 0.040 3.960 4 C -0.110 4.110 5 C -0.601 4.601 6 H 0.134 0.866 7 S 2.534 3.466 8 O -0.978 6.978 9 O -0.976 6.976 10 C -1.005 5.005 11 H 0.101 0.899 12 C 0.133 3.867 13 N -0.836 5.836 14 Si 0.919 3.081 15 H -0.262 1.262 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.063 3.937 19 H 0.065 0.935 20 H 0.070 0.930 21 H 0.031 0.969 22 H 0.047 0.953 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.288 0.712 27 H 0.095 0.905 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.820 1.204 -8.322 10.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.245 5.245 3 C -0.089 4.089 4 C -0.148 4.148 5 C -0.705 4.705 6 H 0.152 0.848 7 S 2.717 3.283 8 O -0.974 6.974 9 O -0.973 6.973 10 C -1.138 5.138 11 H 0.119 0.881 12 C -0.085 4.085 13 N -0.465 5.465 14 Si 0.743 3.257 15 H -0.186 1.186 16 H -0.196 1.196 17 H -0.197 1.197 18 C -0.064 4.064 19 H 0.084 0.916 20 H 0.088 0.912 21 H 0.049 0.951 22 H 0.065 0.935 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.420 1.745 -8.133 9.928 hybrid contribution -0.350 -1.132 0.387 1.246 sum -5.770 0.613 -7.746 9.678 Atomic orbital electron populations 1.22541 0.88207 1.02258 1.00635 1.64798 1.07762 1.14704 1.37271 1.22822 0.95599 0.90182 1.00285 1.22127 0.98851 0.93657 1.00197 1.31644 1.06711 1.02371 1.29776 0.84782 1.03562 0.73941 0.78081 0.72759 1.93357 1.35675 1.83791 1.84612 1.93349 1.62898 1.82874 1.58183 1.30193 1.59626 1.16576 1.07393 0.88076 1.24737 0.89300 1.00466 0.93985 1.69955 1.35171 1.35360 1.05973 0.86158 0.78621 0.81829 0.79098 1.18552 1.19645 1.19656 1.22913 0.91220 1.00486 0.91823 0.91578 0.91163 0.95082 0.93477 0.90232 0.91216 0.89726 0.90182 0.88675 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.40 60.07 0.56 0.72 15 2 N -0.52 -8.20 5.55 -238.72 -1.33 -9.53 15 3 C 0.04 0.58 6.70 -2.76 -0.02 0.56 15 4 C -0.11 -1.84 6.53 -25.38 -0.17 -2.01 15 5 C -0.60 -11.69 3.61 -24.87 -0.09 -11.78 15 6 H 0.13 2.41 8.14 -51.93 -0.42 1.99 15 7 S 2.53 65.32 3.91 -107.50 -0.42 64.90 15 8 O -0.98 -28.32 17.85 -57.54 -1.03 -29.35 15 9 O -0.98 -27.71 17.25 -57.54 -0.99 -28.70 15 10 C -1.00 -27.20 9.23 30.60 0.28 -26.92 15 11 H 0.10 2.46 7.81 -52.49 -0.41 2.05 15 12 C 0.13 3.71 5.46 -17.82 -0.10 3.62 15 13 N -0.84 -24.70 13.03 55.43 0.72 -23.98 15 14 Si 0.92 20.49 29.54 -169.99 -5.02 15.47 15 15 H -0.26 -5.59 7.11 56.52 0.40 -5.19 15 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 18 C 0.06 1.14 5.91 -1.90 -0.01 1.13 15 19 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 20 H 0.07 0.83 8.14 -51.93 -0.42 0.40 15 21 H 0.03 0.40 8.00 -51.93 -0.42 -0.02 15 22 H 0.05 0.64 7.73 -51.93 -0.40 0.24 15 23 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.07 1.18 7.81 -51.93 -0.41 0.77 15 25 H 0.08 1.24 8.14 -51.92 -0.42 0.82 15 26 H 0.29 7.63 8.31 -40.82 -0.34 7.29 15 27 H 0.09 1.61 8.14 -51.93 -0.42 1.19 15 28 H 0.07 1.25 7.35 -51.93 -0.38 0.87 15 LS Contribution 251.15 15.07 3.78 3.78 Total: -1.00 -34.17 251.15 -7.50 -41.67 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -3.69 Total: 0.39 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 0.46 Total: -34.66 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: -0.60 Total: -33.50 kcal Atomic # 8 Polarization: -56.03 SS G_CDS: -2.02 Total: -58.05 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 65.32 SS G_CDS: -0.42 Total: 64.90 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -34.17 -7.50 -41.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258945316.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.053 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds