Wall clock time and date at job start Mon Mar 30 2020 20:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47901 * 111.00213 * 2 1 4 4 C 1.53986 * 107.05796 * 145.84745 * 3 2 1 5 5 C 1.54599 * 105.13992 * 358.77597 * 4 3 2 6 6 H 1.09002 * 110.72268 * 96.57808 * 5 4 3 7 7 S 1.81395 * 110.72213 * 219.68347 * 5 4 3 8 8 O 1.42105 * 110.54530 * 291.62515 * 7 5 4 9 9 O 1.42101 * 110.54333 * 68.37687 * 7 5 4 10 10 C 1.76198 * 104.44778 * 180.02562 * 7 5 4 11 11 H 1.07998 * 120.00076 * 359.97438 * 10 7 5 12 12 C 1.37884 * 120.00299 * 179.97438 * 10 7 5 13 13 N 1.31516 * 119.99566 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 120.00197 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.47089 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46844 * 120.00242 * 14 12 10 17 17 H 1.48500 * 109.47062 * 240.00246 * 14 12 10 18 18 C 1.48524 * 111.00049 * 117.40084 * 2 1 3 19 19 H 1.09004 * 109.47729 * 60.11988 * 1 2 3 20 20 H 1.08997 * 109.47597 * 180.12856 * 1 2 3 21 21 H 1.09005 * 109.46963 * 300.12610 * 1 2 3 22 22 H 1.09001 * 109.91266 * 26.49035 * 3 2 1 23 23 H 1.09007 * 110.08002 * 265.29528 * 3 2 1 24 24 H 1.09003 * 110.30834 * 239.85945 * 4 3 2 25 25 H 1.09008 * 110.30848 * 117.69165 * 4 3 2 26 26 H 0.97000 * 119.99840 * 179.97438 * 13 12 10 27 27 H 1.08998 * 110.67079 * 81.84445 * 18 2 1 28 28 H 1.08993 * 110.66862 * 318.70727 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.2983 1.3658 0.8264 5 6 3.4492 -0.0931 1.3152 6 1 4.1140 -0.6533 0.6578 7 16 4.0536 -0.1379 3.0249 8 8 5.3964 0.3223 3.0914 9 8 3.0644 0.3576 3.9167 10 6 4.1638 -1.8543 3.4074 11 1 3.8904 -2.5913 2.6667 12 6 4.5990 -2.2568 4.6523 13 7 4.9314 -1.3594 5.5544 14 14 4.7151 -4.0765 5.0580 15 1 4.2863 -4.8743 3.8812 16 1 6.1186 -4.4182 5.4025 17 1 3.8332 -4.3835 6.2127 18 6 2.0013 -0.6381 1.2310 19 1 -0.3635 0.5120 -0.8911 20 1 -0.3634 -1.0276 0.0023 21 1 -0.3633 0.5158 0.8889 22 1 1.2758 2.0561 0.4571 23 1 2.2116 1.7001 -1.0204 24 1 3.2137 2.0428 1.6766 25 1 4.1471 1.6454 0.2022 26 1 5.2373 -1.6425 6.4303 27 1 2.0041 -1.7235 1.1314 28 1 1.4238 -0.3323 2.1034 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258945316.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:56 Heat of formation + Delta-G solvation = -109.399214 kcal Electronic energy + Delta-G solvation = -13607.940881 eV Core-core repulsion = 11170.484539 eV Total energy + Delta-G solvation = -2437.456342 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 219.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.79027 -37.21616 -36.19603 -35.09225 -33.29420 -30.17854 -28.14384 -26.65915 -22.72347 -22.12932 -20.38570 -18.95621 -17.96829 -17.15553 -16.83915 -16.03553 -15.77834 -15.24896 -15.12116 -14.72291 -14.04087 -13.96218 -13.23827 -13.01430 -12.87862 -12.75093 -12.52307 -12.45316 -12.42311 -12.33700 -12.24064 -11.85316 -11.21501 -11.16207 -10.65397 -9.49599 -8.69533 -7.41673 -0.05667 1.34853 1.35476 1.53388 2.20148 2.63073 2.98802 3.09845 3.36970 3.61252 3.70587 3.96916 4.15501 4.26631 4.44851 4.50414 4.60096 4.64920 4.68877 4.85356 4.92243 5.00020 5.06233 5.30835 5.72618 5.92690 6.02020 6.84099 8.27690 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.042347 B = 0.010513 C = 0.009213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.040653 B = 2662.763111 C = 3038.364764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.522 5.522 3 C 0.040 3.960 4 C -0.121 4.121 5 C -0.572 4.572 6 H 0.155 0.845 7 S 2.517 3.483 8 O -1.025 7.025 9 O -1.019 7.019 10 C -1.026 5.026 11 H 0.123 0.877 12 C 0.067 3.933 13 N -0.889 5.889 14 Si 0.989 3.011 15 H -0.243 1.243 16 H -0.262 1.262 17 H -0.261 1.261 18 C 0.060 3.940 19 H 0.091 0.909 20 H 0.079 0.921 21 H 0.027 0.973 22 H 0.057 0.943 23 H 0.109 0.891 24 H 0.059 0.941 25 H 0.108 0.892 26 H 0.294 0.706 27 H 0.106 0.894 28 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.825 0.029 -10.489 12.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.247 5.247 3 C -0.089 4.089 4 C -0.160 4.160 5 C -0.683 4.683 6 H 0.173 0.827 7 S 2.707 3.293 8 O -1.022 7.022 9 O -1.016 7.016 10 C -1.159 5.159 11 H 0.141 0.859 12 C -0.145 4.145 13 N -0.520 5.520 14 Si 0.807 3.193 15 H -0.165 1.165 16 H -0.187 1.187 17 H -0.186 1.186 18 C -0.069 4.069 19 H 0.110 0.890 20 H 0.098 0.902 21 H 0.046 0.954 22 H 0.076 0.924 23 H 0.128 0.872 24 H 0.078 0.922 25 H 0.127 0.873 26 H 0.104 0.896 27 H 0.124 0.876 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.411 0.581 -10.249 12.103 hybrid contribution -0.100 -0.688 0.939 1.169 sum -6.511 -0.107 -9.310 11.361 Atomic orbital electron populations 1.22684 0.86299 1.03349 1.01732 1.64855 1.09595 1.15129 1.35078 1.22951 0.94325 0.90011 1.01563 1.22367 1.01536 0.91284 1.00768 1.31151 1.08003 1.05400 1.23698 0.82677 1.03504 0.72892 0.77654 0.75211 1.93293 1.37980 1.84214 1.86738 1.93289 1.63155 1.83248 1.61888 1.30642 1.59134 1.17930 1.08186 0.85885 1.26046 0.88498 1.06098 0.93907 1.70070 1.36854 1.38168 1.06890 0.85125 0.79249 0.75168 0.79752 1.16524 1.18672 1.18576 1.22956 0.89838 1.01420 0.92687 0.89009 0.90237 0.95399 0.92419 0.87246 0.92203 0.87299 0.89586 0.87594 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.40 127.69 1.20 1.37 15 2 N -0.52 -14.66 5.55 -909.19 -5.05 -19.71 15 3 C 0.04 1.03 6.70 86.44 0.58 1.60 15 4 C -0.12 -3.82 6.53 31.47 0.21 -3.61 15 5 C -0.57 -21.44 3.61 31.80 0.11 -21.32 15 6 H 0.16 5.21 8.14 -2.39 -0.02 5.19 15 7 S 2.52 132.84 3.91 -56.49 -0.22 132.62 15 8 O -1.03 -61.64 17.85 -127.65 -2.28 -63.92 15 9 O -1.02 -60.24 17.25 -127.65 -2.20 -62.44 15 10 C -1.03 -55.90 9.23 67.74 0.62 -55.28 15 11 H 0.12 5.87 7.81 -2.91 -0.02 5.85 15 12 C 0.07 3.76 5.46 84.66 0.46 4.22 15 13 N -0.89 -54.23 13.03 21.45 0.28 -53.95 15 14 Si 0.99 41.47 29.54 68.60 2.03 43.49 15 15 H -0.24 -9.30 7.11 99.48 0.71 -8.59 15 16 H -0.26 -10.50 7.11 99.48 0.71 -9.79 15 17 H -0.26 -10.41 7.11 99.48 0.71 -9.71 15 18 C 0.06 2.04 5.91 86.65 0.51 2.55 15 19 H 0.09 1.59 8.14 -2.38 -0.02 1.57 15 20 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 21 H 0.03 0.64 8.00 -2.38 -0.02 0.62 15 22 H 0.06 1.38 7.73 -2.39 -0.02 1.36 15 23 H 0.11 2.23 8.14 -2.38 -0.02 2.21 15 24 H 0.06 2.00 7.81 -2.39 -0.02 1.98 15 25 H 0.11 2.90 8.14 -2.38 -0.02 2.88 15 26 H 0.29 16.14 8.31 -92.71 -0.77 15.37 15 27 H 0.11 3.36 8.14 -2.39 -0.02 3.34 15 28 H 0.05 1.86 7.35 -2.39 -0.02 1.84 15 Total: -1.00 -76.05 251.15 -2.61 -78.65 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.14 Total: 15.72 kcal Atomic # 6 Polarization: -74.16 SS G_CDS: 3.70 Total: -70.46 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -4.77 Total: -73.66 kcal Atomic # 8 Polarization: -121.88 SS G_CDS: -4.48 Total: -126.36 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: 132.84 SS G_CDS: -0.22 Total: 132.62 kcal Total: -76.05 -2.61 -78.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258945316.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.745 kcal (2) G-P(sol) polarization free energy of solvation -76.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds