Wall clock time and date at job start Mon Mar 30 2020 20:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30453 * 125.72806 * 2 1 4 4 C 1.34185 * 109.39854 * 179.71422 * 3 2 1 5 5 C 1.34580 * 108.25804 * 0.43726 * 4 3 2 6 6 N 1.36070 * 125.73565 * 179.97438 * 2 1 3 7 7 C 1.38881 * 126.50564 * 0.02562 * 6 2 1 8 8 N 1.30594 * 125.14997 * 179.69842 * 7 6 2 9 9 C 1.36257 * 108.55909 * 179.83928 * 8 7 6 10 10 C 1.41200 * 126.63224 * 180.14284 * 9 8 7 11 11 H 1.08002 * 119.99758 * 180.31801 * 10 9 8 12 12 C 1.39686 * 119.99703 * 0.32028 * 10 9 8 13 13 N 1.31019 * 120.00317 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99505 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47186 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47106 * 120.00071 * 14 12 10 17 17 H 1.48499 * 109.47278 * 239.99652 * 14 12 10 18 18 C 1.38863 * 106.73550 * 0.41258 * 9 8 7 19 19 O 1.34286 * 125.14827 * 359.97438 * 7 6 2 20 20 H 1.09007 * 109.46728 * 270.02380 * 1 2 3 21 21 H 1.08995 * 109.47474 * 30.02034 * 1 2 3 22 22 H 1.08996 * 109.46854 * 150.02882 * 1 2 3 23 23 H 1.08002 * 125.87235 * 180.26998 * 4 3 2 24 24 H 1.08002 * 126.59574 * 179.84345 * 5 4 3 25 25 H 0.97007 * 119.99809 * 180.02562 * 13 12 10 26 26 H 1.07999 * 126.69023 * 179.71717 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2688 1.0590 0.0000 4 6 3.5565 0.6818 0.0063 5 6 3.6018 -0.6633 0.0007 6 7 2.3018 -1.1045 0.0005 7 6 1.8782 -2.4271 0.0006 8 7 2.6657 -3.4689 -0.0046 9 6 1.8970 -4.5938 0.0010 10 6 2.3571 -5.9287 0.0011 11 1 1.6488 -6.7440 0.0007 12 6 3.7284 -6.1948 0.0017 13 7 4.5876 -5.2057 0.0027 14 14 4.3371 -7.9608 0.0024 15 1 3.1747 -8.8850 0.0016 16 1 5.1607 -8.2011 -1.2097 17 1 5.1598 -8.2004 1.2152 18 6 0.5734 -4.1736 0.0005 19 8 0.5967 -2.8285 0.0007 20 1 -0.3633 0.0004 1.0278 21 1 -0.3634 0.8897 -0.5141 22 1 -0.3633 -0.8902 -0.5134 23 1 4.4099 1.3437 0.0120 24 1 4.4901 -1.2776 0.0011 25 1 5.5399 -5.3905 0.0027 26 1 -0.3037 -4.8038 -0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259391788.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:01 Heat of formation + Delta-G solvation = 86.485306 kcal Electronic energy + Delta-G solvation = -14218.547482 eV Core-core repulsion = 11686.434130 eV Total energy + Delta-G solvation = -2532.113352 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.09521 -41.07913 -34.38479 -33.57680 -32.28104 -31.30179 -28.56177 -26.67479 -25.45769 -22.45086 -21.49776 -20.07863 -19.24242 -17.69622 -16.78973 -16.00470 -15.07516 -14.90535 -14.43783 -13.92576 -13.63120 -13.22199 -12.75934 -12.52283 -12.45940 -11.96073 -11.39557 -11.09101 -10.71895 -10.50790 -10.20299 -10.04563 -9.81887 -8.99082 -8.90969 -8.10153 -7.36544 -6.66186 -4.53868 1.85348 2.52140 2.88469 3.06837 3.11219 3.23291 3.38362 3.91914 4.12414 4.25880 4.75246 5.20779 5.29069 5.62172 5.77500 5.79962 6.01080 6.11216 6.23371 6.61883 6.75546 6.98539 7.04537 7.14527 7.32572 7.74722 8.06321 8.31982 8.53260 8.74649 9.29514 10.28213 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.048718 B = 0.008259 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.594881 B = 3389.483398 C = 3948.932340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.209 3.791 3 N -0.485 5.485 4 C -0.042 4.042 5 C -0.006 4.006 6 N -0.358 5.358 7 C 0.335 3.665 8 N -0.424 5.424 9 C 0.191 3.809 10 C -0.445 4.445 11 H 0.090 0.910 12 C 0.073 3.927 13 N -0.761 5.761 14 Si 0.914 3.086 15 H -0.261 1.261 16 H -0.274 1.274 17 H -0.274 1.274 18 C -0.277 4.277 19 O -0.220 6.220 20 H 0.079 0.921 21 H 0.088 0.912 22 H 0.083 0.917 23 H 0.176 0.824 24 H 0.186 0.814 25 H 0.275 0.725 26 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.412 3.913 -0.014 4.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.053 4.053 3 N -0.205 5.205 4 C -0.187 4.187 5 C -0.137 4.137 6 N -0.043 5.043 7 C 0.041 3.959 8 N -0.165 5.165 9 C 0.074 3.926 10 C -0.477 4.477 11 H 0.108 0.892 12 C -0.148 4.148 13 N -0.385 5.385 14 Si 0.739 3.261 15 H -0.185 1.185 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.346 4.346 19 O -0.108 6.108 20 H 0.098 0.902 21 H 0.106 0.894 22 H 0.102 0.898 23 H 0.193 0.807 24 H 0.203 0.797 25 H 0.086 0.914 26 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.896 4.748 -0.023 5.113 hybrid contribution 0.041 -1.758 0.020 1.758 sum -1.855 2.990 -0.003 3.519 Atomic orbital electron populations 1.20241 0.84626 1.04101 1.03633 1.23693 0.95901 0.80208 1.05470 1.70218 1.02401 1.27342 1.20536 1.22236 0.94667 0.92405 1.09434 1.22875 0.85990 0.95964 1.08842 1.41506 1.07773 1.01254 1.53760 1.21396 0.80644 0.85670 1.08143 1.71636 1.30142 0.95822 1.18853 1.19299 0.86567 0.92240 0.94496 1.18629 0.92225 0.89507 1.47381 0.89200 1.25913 0.96901 0.99173 0.92808 1.70048 1.02872 1.32441 1.33108 0.86164 0.79421 0.82065 0.78488 1.18462 1.19907 1.19903 1.24602 0.99852 0.77181 1.32926 1.83933 1.27213 1.25246 1.74393 0.90248 0.89363 0.89846 0.80688 0.79725 0.91418 0.78764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 9.89 36.01 0.36 -0.69 15 2 C 0.21 4.04 7.90 -154.51 -1.22 2.82 15 3 N -0.49 -9.23 11.24 -10.60 -0.12 -9.35 15 4 C -0.04 -0.73 11.85 -17.82 -0.21 -0.94 15 5 C -0.01 -0.12 11.39 -16.40 -0.19 -0.30 15 6 N -0.36 -7.77 2.96 -61.41 -0.18 -7.95 15 7 C 0.34 8.22 8.64 -86.67 -0.75 7.47 15 8 N -0.42 -11.55 9.41 -11.82 -0.11 -11.66 15 9 C 0.19 5.15 6.69 -84.54 -0.57 4.58 15 10 C -0.45 -11.72 9.38 -37.92 -0.36 -12.08 15 11 H 0.09 2.18 7.84 -52.49 -0.41 1.77 15 12 C 0.07 1.86 5.49 -17.36 -0.10 1.76 15 13 N -0.76 -20.23 11.95 55.53 0.66 -19.56 15 14 Si 0.91 18.53 29.56 -169.99 -5.02 13.51 15 15 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 16 H -0.27 -5.49 7.11 56.52 0.40 -5.08 15 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 18 C -0.28 -6.60 12.28 30.96 0.38 -6.22 15 19 O -0.22 -5.16 8.50 5.12 0.04 -5.11 15 20 H 0.08 1.12 8.14 -51.92 -0.42 0.69 15 21 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.08 1.35 6.40 -51.93 -0.33 1.01 15 23 H 0.18 2.37 8.06 -52.49 -0.42 1.94 15 24 H 0.19 3.50 8.06 -52.49 -0.42 3.08 15 25 H 0.28 6.64 8.30 -40.82 -0.34 6.30 15 26 H 0.20 3.91 8.06 -52.49 -0.42 3.49 15 LS Contribution 241.47 15.07 3.64 3.64 Total: -1.00 -30.24 241.47 -5.73 -35.98 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -1.99 Total: 4.10 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.65 Total: -3.59 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.25 Total: -48.52 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.04 Total: -5.11 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.24 -5.73 -35.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259391788.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.462 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds