Wall clock time and date at job start Mon Mar 30 2020 20:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35515 * 126.44491 * 2 1 4 4 N 1.33206 * 108.48963 * 180.02562 * 3 2 1 5 5 C 1.32067 * 109.23591 * 359.97438 * 4 3 2 6 6 C 1.46490 * 125.89729 * 179.97438 * 5 4 3 7 7 N 1.32225 * 125.30500 * 180.02562 * 6 5 4 8 8 C 1.32475 * 109.25944 * 179.72494 * 7 6 5 9 9 C 1.40029 * 107.34689 * 0.43712 * 8 7 6 10 10 C 1.39351 * 126.78434 * 179.83145 * 9 8 7 11 11 H 1.07996 * 119.99930 * 5.39908 * 10 9 8 12 12 C 1.40278 * 119.99816 * 185.11388 * 10 9 8 13 13 N 1.30724 * 120.00302 * 354.29032 * 12 10 9 14 14 Si 1.86800 * 119.99918 * 174.28404 * 12 10 9 15 15 H 1.48503 * 109.47202 * 94.98193 * 14 12 10 16 16 H 1.48500 * 109.47552 * 214.98808 * 14 12 10 17 17 H 1.48505 * 109.47300 * 334.98380 * 14 12 10 18 18 O 1.34737 * 125.30400 * 0.03668 * 6 5 4 19 19 N 1.36457 * 126.44547 * 180.31673 * 2 1 3 20 20 H 0.97001 * 126.51995 * 359.97438 * 19 2 1 21 21 H 1.09000 * 109.47098 * 89.96854 * 1 2 3 22 22 H 1.09003 * 109.47308 * 209.97470 * 1 2 3 23 23 H 1.09004 * 109.47039 * 329.97650 * 1 2 3 24 24 H 1.07996 * 125.75296 * 0.06061 * 3 2 1 25 25 H 1.07995 * 126.32645 * 180.27489 * 8 7 6 26 26 H 0.97003 * 120.00298 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3120 1.0901 0.0000 4 7 3.5792 0.6795 -0.0006 5 6 3.6087 -0.6409 -0.0004 6 6 4.8143 -1.4730 -0.0014 7 7 4.8302 -2.7952 -0.0016 8 6 6.0859 -3.2171 -0.0086 9 6 6.9074 -2.0831 -0.0027 10 6 8.3007 -2.0621 -0.0036 11 1 8.8546 -2.9844 -0.0972 12 6 8.9838 -0.8422 0.1111 13 7 8.3180 0.2827 0.1064 14 14 10.8449 -0.8254 0.2708 15 1 11.4551 -0.6353 -1.0697 16 1 11.2551 0.2879 1.1639 17 1 11.3042 -2.1155 0.8452 18 8 6.0798 -1.0105 -0.0019 19 7 2.3176 -1.0977 -0.0061 20 1 2.0335 -2.0251 -0.0108 21 1 -0.3633 0.0006 -1.0277 22 1 -0.3634 -0.8902 0.5134 23 1 -0.3633 0.8898 0.5142 24 1 1.9818 2.1184 0.0009 25 1 6.4152 -4.2456 -0.0147 26 1 8.7904 1.1263 0.1861 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259545321.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:11 Heat of formation + Delta-G solvation = 28.665646 kcal Electronic energy + Delta-G solvation = -13898.167322 eV Core-core repulsion = 11363.546721 eV Total energy + Delta-G solvation = -2534.620600 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.13513 -42.57422 -35.98566 -34.89406 -33.78916 -32.83177 -31.32234 -28.44076 -26.27532 -23.70025 -22.73187 -21.87944 -21.27962 -19.59419 -18.68787 -17.17973 -16.91859 -16.66062 -15.86043 -15.39559 -15.10872 -14.36490 -14.16397 -13.92442 -13.58591 -13.27920 -13.19779 -13.03135 -12.84836 -12.05292 -11.86459 -11.43667 -11.13831 -11.12929 -10.94504 -10.08038 -8.93665 -8.88523 -6.63942 0.44062 1.19070 1.37285 1.57620 1.63868 1.76555 1.95279 2.11591 2.59137 2.97161 3.02758 3.33864 4.07528 4.24451 4.38726 4.61532 4.77804 4.85434 4.86110 4.95584 5.14326 5.34176 5.47234 5.76987 5.91827 6.01674 6.34312 6.41644 6.45729 7.09150 7.45801 8.06073 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.057981 B = 0.007051 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.800220 B = 3969.924632 C = 4435.490275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.013 4.013 3 C -0.052 4.052 4 N -0.517 5.517 5 C 0.288 3.712 6 C 0.036 3.964 7 N -0.432 5.432 8 C -0.223 4.223 9 C 0.144 3.856 10 C -0.434 4.434 11 H 0.138 0.862 12 C 0.012 3.988 13 N -0.793 5.793 14 Si 1.017 2.983 15 H -0.255 1.255 16 H -0.267 1.267 17 H -0.239 1.239 18 O -0.194 6.194 19 N -0.537 5.537 20 H 0.431 0.569 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.105 0.895 24 H 0.198 0.802 25 H 0.184 0.816 26 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.062 -0.084 0.231 7.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.131 4.131 3 C -0.202 4.202 4 N -0.239 5.239 5 C 0.030 3.970 6 C -0.158 4.158 7 N -0.162 5.162 8 C -0.375 4.375 9 C 0.088 3.912 10 C -0.462 4.462 11 H 0.155 0.845 12 C -0.208 4.208 13 N -0.417 5.417 14 Si 0.834 3.166 15 H -0.179 1.179 16 H -0.191 1.191 17 H -0.162 1.162 18 O -0.083 6.083 19 N -0.143 5.143 20 H 0.271 0.729 21 H 0.108 0.892 22 H 0.098 0.902 23 H 0.124 0.876 24 H 0.215 0.785 25 H 0.201 0.799 26 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.054 0.459 0.239 7.073 hybrid contribution 0.614 -0.375 0.023 0.720 sum -6.441 0.084 0.262 6.447 Atomic orbital electron populations 1.20394 0.82526 1.05130 1.04278 1.22213 0.96367 0.85499 1.09044 1.22745 0.87119 1.00520 1.09808 1.70431 1.24791 1.07923 1.20735 1.18537 0.81955 0.87996 1.08546 1.20889 0.83086 0.87248 1.24564 1.69352 1.25340 1.08132 1.13423 1.23309 0.87018 0.99117 1.28024 1.21465 0.92750 0.83595 0.93387 1.19495 0.86963 0.97193 1.42542 0.84463 1.27586 1.08690 0.93567 0.91004 1.69885 1.42083 1.00380 1.29378 0.84662 0.71769 0.80365 0.79807 1.17898 1.19144 1.16187 1.84909 1.14930 1.34744 1.73669 1.42978 1.04569 1.10532 1.56195 0.72876 0.89209 0.90211 0.87633 0.78514 0.79876 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.44 71.24 0.74 -0.36 15 2 C -0.01 -0.41 7.24 41.21 0.30 -0.11 15 3 C -0.05 -1.89 11.77 83.85 0.99 -0.91 15 4 N -0.52 -25.63 11.28 -189.84 -2.14 -27.77 15 5 C 0.29 14.34 8.06 135.79 1.09 15.44 15 6 C 0.04 2.03 8.15 86.79 0.71 2.74 15 7 N -0.43 -23.23 11.25 -301.76 -3.40 -26.63 15 8 C -0.22 -11.83 11.97 85.03 1.02 -10.81 15 9 C 0.14 8.33 6.82 22.97 0.16 8.49 15 10 C -0.43 -22.61 9.32 23.03 0.21 -22.39 15 11 H 0.14 6.21 7.86 -2.91 -0.02 6.18 15 12 C 0.01 0.59 5.49 85.35 0.47 1.06 15 13 N -0.79 -43.31 12.06 21.89 0.26 -43.05 15 14 Si 1.02 35.35 29.57 68.60 2.03 37.38 15 15 H -0.25 -8.42 7.11 99.48 0.71 -7.71 15 16 H -0.27 -9.02 7.11 99.48 0.71 -8.31 15 17 H -0.24 -7.63 7.11 99.48 0.71 -6.92 15 18 O -0.19 -12.17 9.21 -18.88 -0.17 -12.34 15 19 N -0.54 -19.99 6.23 -175.93 -1.10 -21.08 15 20 H 0.43 13.80 8.96 -92.71 -0.83 12.96 15 21 H 0.09 1.25 8.14 -2.39 -0.02 1.23 15 22 H 0.08 1.12 8.14 -2.39 -0.02 1.11 15 23 H 0.11 1.33 8.14 -2.39 -0.02 1.31 15 24 H 0.20 5.55 8.06 -2.91 -0.02 5.53 15 25 H 0.18 8.33 8.06 -2.91 -0.02 8.31 15 26 H 0.30 14.63 8.29 -92.71 -0.77 13.86 15 Total: -1.00 -74.37 245.84 1.57 -72.81 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.39 Total: 27.55 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 5.69 Total: -6.86 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -6.37 Total: -118.53 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.17 Total: -12.34 kcal Atomic # 14 Polarization: 35.35 SS G_CDS: 2.03 Total: 37.38 kcal Total: -74.37 1.57 -72.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259545321.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.471 kcal (2) G-P(sol) polarization free energy of solvation -74.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds