Wall clock time and date at job start Mon Mar 30 2020 20:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.47203 * 109.46883 * 2 1 4 4 N 2.60807 * 109.47091 * 359.97438 * 2 1 3 5 5 C 1.50701 * 109.47262 * 119.99378 * 2 1 3 6 6 H 1.08006 * 119.99881 * 123.92554 * 5 2 1 7 7 C 1.37876 * 120.00417 * 303.93306 * 5 2 1 8 8 N 1.31517 * 120.00068 * 179.97438 * 7 5 2 9 9 Si 1.86800 * 119.99727 * 359.97438 * 7 5 2 10 10 H 1.48502 * 109.47217 * 90.00376 * 9 7 5 11 11 H 1.48501 * 109.46968 * 210.00154 * 9 7 5 12 12 H 1.48497 * 109.47138 * 330.00186 * 9 7 5 13 13 C 1.50696 * 109.47714 * 239.99912 * 2 1 3 14 14 C 1.38263 * 119.99143 * 114.60246 * 13 2 1 15 15 C 1.38221 * 120.05737 * 180.28410 * 14 13 2 16 16 C 1.38225 * 120.02135 * 359.97438 * 15 14 13 17 17 C 1.38440 * 119.97613 * 0.02562 * 16 15 14 18 18 F 1.35087 * 120.02662 * 180.02562 * 17 16 15 19 19 C 1.38176 * 119.98556 * 294.88808 * 13 2 1 20 20 H 1.09001 * 109.47122 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47148 * 300.00099 * 1 2 3 22 22 H 1.09002 * 109.47229 * 60.00272 * 1 2 3 23 23 H 0.97002 * 119.99754 * 179.97438 * 8 7 5 24 24 H 1.08005 * 119.97167 * 0.26549 * 14 13 2 25 25 H 1.07999 * 119.99302 * 180.02562 * 15 14 13 26 26 H 1.08001 * 120.01333 * 179.97438 * 16 15 14 27 27 H 1.08004 * 120.01099 * 359.73485 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0206 1.3879 0.0000 4 7 2.3993 2.4589 -0.0011 5 6 2.0323 -0.7103 1.2305 6 1 2.7045 -1.5500 1.1328 7 6 1.6338 -0.2883 2.4812 8 7 2.0718 -0.9085 3.5550 9 14 0.4716 1.1643 2.6503 10 1 -0.9319 0.6792 2.6396 11 1 0.7422 1.8684 3.9295 12 1 0.6806 2.1001 1.5164 13 6 2.0324 -0.7104 -1.2304 14 6 2.7329 -0.0102 -2.1951 15 6 3.1893 -0.6591 -3.3269 16 6 2.9463 -2.0094 -3.4953 17 6 2.2450 -2.7116 -2.5300 18 9 2.0074 -4.0314 -2.6933 19 6 1.7878 -2.0601 -1.3968 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.7917 -0.6114 4.4349 24 1 2.9233 1.0449 -2.0643 25 1 3.7367 -0.1112 -4.0797 26 1 3.3026 -2.5162 -4.3799 27 1 1.2404 -2.6068 -0.6432 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259595051.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:15 Heat of formation + Delta-G solvation = 14.677360 kcal Electronic energy + Delta-G solvation = -14196.510161 eV Core-core repulsion = 11641.363021 eV Total energy + Delta-G solvation = -2555.147140 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.53372 -39.22098 -36.38289 -34.01204 -32.06275 -30.15516 -29.31044 -25.58273 -23.72853 -22.23919 -21.03186 -18.21374 -16.90758 -15.96275 -15.68847 -15.32665 -15.16493 -14.93170 -13.78001 -13.39147 -13.11586 -12.86753 -12.66287 -12.40052 -12.15466 -11.84233 -11.65825 -11.34102 -11.02768 -10.80504 -10.39902 -10.32248 -9.57862 -9.33230 -8.89995 -8.48386 -8.25510 -6.40926 -4.49886 1.54704 1.62867 3.08801 3.21759 3.25565 3.70752 3.79148 4.00493 4.14133 4.54961 4.76503 5.06999 5.17304 5.34493 5.46718 5.58004 5.81606 5.99981 6.12137 6.20665 6.34756 6.42466 6.55068 6.69306 6.73995 6.93223 7.22617 7.29681 8.10599 8.47638 8.69748 9.15259 10.69270 Molecular weight = 219.08amu Principal moments of inertia in cm(-1) A = 0.034891 B = 0.010658 C = 0.009139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.312087 B = 2626.440769 C = 3062.915853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.161 3.839 3 C 0.242 3.758 4 N -0.493 5.493 5 C -0.517 4.517 6 H 0.095 0.905 7 C 0.087 3.913 8 N -0.872 5.872 9 Si 0.865 3.135 10 H -0.271 1.271 11 H -0.293 1.293 12 H -0.249 1.249 13 C -0.002 4.002 14 C -0.138 4.138 15 C -0.093 4.093 16 C -0.170 4.170 17 C 0.092 3.908 18 F -0.145 7.145 19 C -0.127 4.127 20 H 0.078 0.922 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.272 0.728 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 -2.188 -10.823 11.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.157 3.843 3 C -0.074 4.074 4 N -0.170 5.170 5 C -0.555 4.555 6 H 0.113 0.887 7 C -0.119 4.119 8 N -0.506 5.506 9 Si 0.695 3.305 10 H -0.198 1.198 11 H -0.220 1.220 12 H -0.174 1.174 13 C -0.003 4.003 14 C -0.156 4.156 15 C -0.111 4.111 16 C -0.189 4.189 17 C 0.073 3.927 18 F -0.124 7.124 19 C -0.146 4.146 20 H 0.097 0.903 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.140 0.860 25 H 0.144 0.856 26 H 0.145 0.855 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.673 -0.635 -10.606 10.756 hybrid contribution -0.660 0.158 0.408 0.792 sum -2.333 -0.476 -10.199 10.473 Atomic orbital electron populations 1.22206 0.94305 1.03001 1.00278 1.15438 0.93192 0.81224 0.94433 1.30128 0.91954 0.94898 0.90402 1.80989 1.11218 1.13245 1.11578 1.20676 1.31636 1.16638 0.86530 0.88658 1.25001 0.95235 0.95990 0.95706 1.69832 1.42527 1.39946 0.98340 0.87262 0.81302 0.83608 0.78331 1.19788 1.22041 1.17393 1.19455 0.94456 0.92846 0.93568 1.21250 0.99695 1.00439 0.94260 1.20846 0.99193 0.93537 0.97542 1.20978 1.02833 0.95270 0.99787 1.17685 1.00821 0.77783 0.96413 1.91458 1.92916 1.32318 1.95716 1.20999 1.02207 0.94678 0.96676 0.90295 0.93092 0.93535 0.91795 0.86030 0.85640 0.85488 0.83571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 7.80 37.16 0.29 -2.35 15 2 C 0.16 3.41 0.53 -159.60 -0.09 3.33 15 3 C 0.24 5.46 8.40 -20.76 -0.17 5.29 15 4 N -0.49 -11.62 17.95 42.16 0.76 -10.86 15 5 C -0.52 -12.89 8.11 -34.44 -0.28 -13.17 15 6 H 0.10 2.55 7.76 -52.48 -0.41 2.15 15 7 C 0.09 2.30 5.43 -17.82 -0.10 2.20 15 8 N -0.87 -24.58 13.96 55.43 0.77 -23.81 15 9 Si 0.87 20.38 23.53 -169.99 -4.00 16.38 15 10 H -0.27 -6.01 6.89 56.52 0.39 -5.62 15 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 12 H -0.25 -5.82 4.56 56.52 0.26 -5.56 15 13 C 0.00 -0.04 4.71 -104.64 -0.49 -0.53 15 14 C -0.14 -2.34 9.15 -39.58 -0.36 -2.71 15 15 C -0.09 -1.32 10.04 -39.59 -0.40 -1.71 15 16 C -0.17 -2.38 10.03 -39.51 -0.40 -2.78 15 17 C 0.09 1.47 7.30 -39.42 -0.29 1.18 15 18 F -0.15 -2.30 17.27 2.25 0.04 -2.26 15 19 C -0.13 -2.21 8.62 -39.51 -0.34 -2.55 15 20 H 0.08 1.35 7.71 -51.93 -0.40 0.95 15 21 H 0.05 1.03 2.78 -51.93 -0.14 0.88 15 22 H 0.05 0.76 8.14 -51.93 -0.42 0.33 15 23 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 24 H 0.12 2.12 6.45 -52.48 -0.34 1.79 15 25 H 0.13 1.40 8.06 -52.49 -0.42 0.98 15 26 H 0.13 1.45 8.06 -52.49 -0.42 1.02 15 27 H 0.15 2.52 7.75 -52.48 -0.41 2.12 15 LS Contribution 236.40 15.07 3.56 3.56 Total: -1.00 -27.88 236.40 -3.75 -31.63 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -2.26 Total: -0.84 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -2.62 Total: -13.79 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 1.53 Total: -34.67 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.00 Total: 16.38 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -27.88 -3.75 -31.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259595051.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.302 kcal (2) G-P(sol) polarization free energy of solvation -27.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds