Wall clock time and date at job start Mon Mar 30 2020 20:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.47203 * 109.46883 * 2 1 4 4 N 2.60807 * 109.47091 * 359.97438 * 2 1 3 5 5 C 1.50701 * 109.47262 * 119.99378 * 2 1 3 6 6 H 1.08006 * 119.99881 * 123.92554 * 5 2 1 7 7 C 1.37876 * 120.00417 * 303.93306 * 5 2 1 8 8 N 1.31517 * 120.00068 * 179.97438 * 7 5 2 9 9 Si 1.86800 * 119.99727 * 359.97438 * 7 5 2 10 10 H 1.48502 * 109.47217 * 90.00376 * 9 7 5 11 11 H 1.48501 * 109.46968 * 210.00154 * 9 7 5 12 12 H 1.48497 * 109.47138 * 330.00186 * 9 7 5 13 13 C 1.50696 * 109.47714 * 239.99912 * 2 1 3 14 14 C 1.38263 * 119.99143 * 114.60246 * 13 2 1 15 15 C 1.38221 * 120.05737 * 180.28410 * 14 13 2 16 16 C 1.38225 * 120.02135 * 359.97438 * 15 14 13 17 17 C 1.38440 * 119.97613 * 0.02562 * 16 15 14 18 18 F 1.35087 * 120.02662 * 180.02562 * 17 16 15 19 19 C 1.38176 * 119.98556 * 294.88808 * 13 2 1 20 20 H 1.09001 * 109.47122 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47148 * 300.00099 * 1 2 3 22 22 H 1.09002 * 109.47229 * 60.00272 * 1 2 3 23 23 H 0.97002 * 119.99754 * 179.97438 * 8 7 5 24 24 H 1.08005 * 119.97167 * 0.26549 * 14 13 2 25 25 H 1.07999 * 119.99302 * 180.02562 * 15 14 13 26 26 H 1.08001 * 120.01333 * 179.97438 * 16 15 14 27 27 H 1.08004 * 120.01099 * 359.73485 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0206 1.3879 0.0000 4 7 2.3993 2.4589 -0.0011 5 6 2.0323 -0.7103 1.2305 6 1 2.7045 -1.5500 1.1328 7 6 1.6338 -0.2883 2.4812 8 7 2.0718 -0.9085 3.5550 9 14 0.4716 1.1643 2.6503 10 1 -0.9319 0.6792 2.6396 11 1 0.7422 1.8684 3.9295 12 1 0.6806 2.1001 1.5164 13 6 2.0324 -0.7104 -1.2304 14 6 2.7329 -0.0102 -2.1951 15 6 3.1893 -0.6591 -3.3269 16 6 2.9463 -2.0094 -3.4953 17 6 2.2450 -2.7116 -2.5300 18 9 2.0074 -4.0314 -2.6933 19 6 1.7878 -2.0601 -1.3968 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 1.7917 -0.6114 4.4349 24 1 2.9233 1.0449 -2.0643 25 1 3.7367 -0.1112 -4.0797 26 1 3.3026 -2.5162 -4.3799 27 1 1.2404 -2.6068 -0.6432 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259595051.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:14 Heat of formation + Delta-G solvation = -1.736729 kcal Electronic energy + Delta-G solvation = -14197.221929 eV Core-core repulsion = 11641.363021 eV Total energy + Delta-G solvation = -2555.858908 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.77437 -40.62337 -37.98987 -35.78700 -33.92056 -31.42192 -30.68751 -27.36896 -25.29324 -23.54205 -22.49095 -19.91783 -18.44041 -17.43568 -17.05288 -16.83522 -16.56559 -16.42929 -15.32878 -14.98478 -14.69024 -14.45601 -14.26472 -14.10183 -13.70618 -13.29850 -13.16203 -12.71542 -12.65134 -12.52629 -12.07446 -11.87531 -11.42713 -11.09883 -10.87081 -9.76003 -9.54321 -8.44815 -6.54935 0.27944 0.39271 1.21740 1.32505 1.34517 1.93404 1.97758 2.18962 2.72268 2.83175 3.27509 3.53299 3.79178 4.04365 4.23451 4.30218 4.48080 4.57667 4.65040 4.75616 5.04546 5.16661 5.26146 5.28919 5.31233 5.44334 5.69560 6.02072 6.13935 6.50887 6.81349 7.12752 8.69120 Molecular weight = 219.08amu Principal moments of inertia in cm(-1) A = 0.034891 B = 0.010658 C = 0.009139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.312087 B = 2626.440769 C = 3062.915853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.159 3.841 3 C 0.250 3.750 4 N -0.512 5.512 5 C -0.506 4.506 6 H 0.066 0.934 7 C 0.042 3.958 8 N -0.920 5.920 9 Si 0.913 3.087 10 H -0.247 1.247 11 H -0.309 1.309 12 H -0.247 1.247 13 C -0.024 4.024 14 C -0.148 4.148 15 C -0.080 4.080 16 C -0.154 4.154 17 C 0.086 3.914 18 F -0.146 7.146 19 C -0.138 4.138 20 H 0.092 0.908 21 H 0.039 0.961 22 H 0.075 0.925 23 H 0.272 0.728 24 H 0.114 0.886 25 H 0.164 0.836 26 H 0.163 0.837 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.622 -1.991 -13.299 13.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.155 3.845 3 C -0.066 4.066 4 N -0.189 5.189 5 C -0.545 4.545 6 H 0.084 0.916 7 C -0.160 4.160 8 N -0.557 5.557 9 Si 0.741 3.259 10 H -0.172 1.172 11 H -0.238 1.238 12 H -0.172 1.172 13 C -0.025 4.025 14 C -0.166 4.166 15 C -0.098 4.098 16 C -0.173 4.173 17 C 0.067 3.933 18 F -0.125 7.125 19 C -0.157 4.157 20 H 0.111 0.889 21 H 0.057 0.943 22 H 0.094 0.906 23 H 0.081 0.919 24 H 0.132 0.868 25 H 0.181 0.819 26 H 0.180 0.820 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.065 -0.443 -13.109 13.278 hybrid contribution -0.452 0.027 1.069 1.161 sum -2.516 -0.417 -12.040 12.307 Atomic orbital electron populations 1.22191 0.92286 1.04292 1.00990 1.15504 0.94766 0.80211 0.94065 1.30322 0.91401 0.95045 0.89799 1.80987 1.11791 1.13916 1.12201 1.20815 1.30041 1.15594 0.88033 0.91586 1.25631 0.96720 0.98049 0.95610 1.69946 1.44861 1.42000 0.98883 0.86509 0.81117 0.80988 0.77244 1.17196 1.23789 1.17153 1.19263 0.96534 0.93315 0.93383 1.21296 0.99984 1.00218 0.95150 1.21211 0.97950 0.93651 0.96961 1.21368 1.00798 0.95131 0.99971 1.17800 1.01141 0.77866 0.96493 1.91460 1.92967 1.32356 1.95675 1.20923 1.02943 0.94377 0.97424 0.88883 0.94298 0.90644 0.91881 0.86784 0.81881 0.81972 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 7.80 71.98 0.56 -4.46 15 2 C 0.16 6.59 0.53 -55.48 -0.03 6.56 15 3 C 0.25 11.03 8.40 89.44 0.75 11.79 15 4 N -0.51 -23.57 17.95 20.01 0.36 -23.21 15 5 C -0.51 -25.61 8.11 25.60 0.21 -25.40 15 6 H 0.07 3.66 7.76 -2.91 -0.02 3.64 15 7 C 0.04 2.24 5.43 84.65 0.46 2.69 15 8 N -0.92 -53.30 13.96 21.45 0.30 -53.00 15 9 Si 0.91 42.04 23.53 68.60 1.61 43.65 15 10 H -0.25 -10.29 6.89 99.48 0.69 -9.61 15 11 H -0.31 -14.95 7.11 99.48 0.71 -14.24 15 12 H -0.25 -11.14 4.56 99.48 0.45 -10.69 15 13 C -0.02 -0.85 4.71 -19.87 -0.09 -0.94 15 14 C -0.15 -4.69 9.15 22.27 0.20 -4.49 15 15 C -0.08 -1.94 10.04 22.26 0.22 -1.72 15 16 C -0.15 -3.69 10.03 22.31 0.22 -3.47 15 17 C 0.09 2.54 7.30 22.38 0.16 2.70 15 18 F -0.15 -4.31 17.27 44.97 0.78 -3.54 15 19 C -0.14 -4.66 8.62 22.31 0.19 -4.47 15 20 H 0.09 3.03 7.71 -2.39 -0.02 3.01 15 21 H 0.04 1.48 2.78 -2.39 -0.01 1.48 15 22 H 0.07 2.26 8.14 -2.39 -0.02 2.24 15 23 H 0.27 14.90 8.31 -92.71 -0.77 14.13 15 24 H 0.11 3.78 6.45 -2.91 -0.02 3.76 15 25 H 0.16 2.76 8.06 -2.91 -0.02 2.73 15 26 H 0.16 2.79 8.06 -2.91 -0.02 2.76 15 27 H 0.14 4.75 7.75 -2.91 -0.02 4.73 15 Total: -1.00 -60.18 236.40 6.83 -53.34 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 0.92 Total: 3.95 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 2.86 Total: -21.20 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: 0.66 Total: -76.21 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.78 Total: -3.54 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.61 Total: 43.65 kcal Total: -60.18 6.83 -53.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259595051.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.606 kcal (2) G-P(sol) polarization free energy of solvation -60.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds