Wall clock time and date at job start Mon Mar 30 2020 20:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29992 * 126.87649 * 2 1 4 4 O 1.20830 * 112.01441 * 179.97438 * 3 2 1 5 5 C 1.33995 * 111.87479 * 359.73813 * 4 3 2 6 6 C 1.36790 * 106.22130 * 0.41239 * 5 4 3 7 7 C 1.48053 * 128.18391 * 179.89204 * 6 5 4 8 8 C 1.36366 * 126.47673 * 319.66656 * 7 6 5 9 9 C 1.41928 * 105.46499 * 180.02562 * 8 7 6 10 10 C 1.41446 * 126.44392 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99913 * 0.02562 * 10 9 8 12 12 C 1.39801 * 120.00289 * 179.97438 * 10 9 8 13 13 N 1.30916 * 119.99812 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00199 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47037 * 90.00250 * 14 12 10 16 16 H 1.48499 * 109.47105 * 210.00275 * 14 12 10 17 17 H 1.48503 * 109.47399 * 330.00388 * 14 12 10 18 18 N 1.32831 * 107.11180 * 359.75036 * 9 8 7 19 19 N 1.28451 * 110.24574 * 0.43130 * 18 9 8 20 20 H 0.97001 * 124.93851 * 179.82876 * 19 18 9 21 21 H 1.08995 * 109.47744 * 270.00832 * 1 2 3 22 22 H 1.09003 * 109.46713 * 30.00910 * 1 2 3 23 23 H 1.08997 * 109.46902 * 149.99863 * 1 2 3 24 24 H 1.08004 * 126.88890 * 180.27721 * 5 4 3 25 25 H 1.08000 * 127.27064 * 0.05152 * 8 7 6 26 26 H 0.96996 * 120.00459 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2871 1.0398 0.0000 4 8 3.4550 0.7299 0.0005 5 6 3.6186 -0.6000 0.0066 6 6 2.3616 -1.1396 0.0007 7 6 1.9797 -2.5701 0.0015 8 6 2.5821 -3.5704 -0.7027 9 6 1.8633 -4.7496 -0.3754 10 6 2.1184 -6.0521 -0.8643 11 1 2.9295 -6.2194 -1.5576 12 6 1.3214 -7.1231 -0.4494 13 7 0.3386 -6.9204 0.3913 14 14 1.6579 -8.8431 -1.0957 15 1 2.6174 -9.5314 -0.1951 16 1 0.3876 -9.6106 -1.1451 17 1 2.2363 -8.7548 -2.4606 18 7 0.9091 -4.4008 0.4803 19 7 0.9562 -3.1375 0.7078 20 1 0.3554 -2.6567 1.2985 21 1 -0.3634 0.0001 1.0276 22 1 -0.3633 0.8899 -0.5140 23 1 -0.3633 -0.8900 -0.5138 24 1 4.5551 -1.1380 0.0125 25 1 3.4279 -3.4838 -1.3687 26 1 -0.2147 -7.6633 0.6790 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259680293.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:20 Heat of formation + Delta-G solvation = 122.656027 kcal Electronic energy + Delta-G solvation = -13937.179003 eV Core-core repulsion = 11406.634131 eV Total energy + Delta-G solvation = -2530.544872 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.64313 -40.38341 -34.76692 -33.31590 -31.99681 -30.14744 -28.77830 -28.10127 -25.61437 -22.98099 -21.09538 -20.14204 -19.42289 -17.76724 -17.34739 -16.30772 -16.11398 -14.64895 -14.19067 -13.66164 -13.25579 -13.09155 -12.95817 -12.49050 -12.37627 -12.16163 -11.17164 -11.09652 -10.84295 -10.47761 -10.02515 -9.84718 -9.50511 -9.21393 -8.52112 -7.69564 -7.29661 -6.31140 -4.19306 1.63973 2.22643 3.15212 3.24031 3.27664 3.44621 3.53093 4.18295 4.25388 4.35549 4.54938 4.76784 5.34644 5.50120 5.56830 5.64772 5.68659 5.78923 6.00336 6.26839 6.53690 7.09945 7.14500 7.43819 7.69832 8.32341 8.46273 8.71934 8.93982 9.22937 10.15964 10.67016 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.065240 B = 0.006672 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.083575 B = 4195.435703 C = 4505.408129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.017 3.983 3 N -0.372 5.372 4 O 0.094 5.906 5 C -0.057 4.057 6 C -0.105 4.105 7 C 0.037 3.963 8 C -0.260 4.260 9 C 0.191 3.809 10 C -0.451 4.451 11 H 0.079 0.921 12 C 0.072 3.928 13 N -0.784 5.784 14 Si 0.905 3.095 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.266 1.266 18 N -0.311 5.311 19 N -0.425 5.425 20 H 0.417 0.583 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.220 0.780 25 H 0.126 0.874 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.448 8.714 -0.062 9.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.143 4.143 3 N -0.079 5.079 4 O 0.030 5.970 5 C -0.140 4.140 6 C -0.111 4.111 7 C -0.090 4.090 8 C -0.293 4.293 9 C 0.043 3.957 10 C -0.490 4.490 11 H 0.098 0.902 12 C -0.145 4.145 13 N -0.412 5.412 14 Si 0.730 3.270 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.190 1.190 18 N -0.144 5.144 19 N -0.132 5.132 20 H 0.257 0.743 21 H 0.096 0.904 22 H 0.094 0.906 23 H 0.102 0.898 24 H 0.237 0.763 25 H 0.144 0.856 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.154 9.489 0.688 9.583 hybrid contribution 0.518 -1.160 -0.480 1.358 sum 1.672 8.329 0.208 8.497 Atomic orbital electron populations 1.20173 0.86158 1.03963 1.03145 1.23702 0.98841 0.88411 1.03311 1.73597 0.89615 1.24315 1.20359 1.84709 1.21136 1.23309 1.67858 1.26008 1.00639 0.82753 1.04598 1.19314 0.91972 0.92627 1.07138 1.18458 0.97646 0.88580 1.04349 1.21575 1.06006 0.92758 1.08914 1.19222 0.90367 0.93241 0.92850 1.18528 1.15079 0.89369 1.26011 0.90246 1.25733 0.94298 1.00311 0.94192 1.69960 1.13994 1.32057 1.25222 0.86385 0.78178 0.82457 0.79938 1.19947 1.20709 1.18986 1.74728 1.25648 0.90390 1.23679 1.43780 1.25308 1.06982 1.37153 0.74303 0.90388 0.90575 0.89790 0.76347 0.85593 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.40 36.01 0.37 -0.64 15 2 C 0.02 0.27 7.37 -81.75 -0.60 -0.33 15 3 N -0.37 -6.02 12.03 33.71 0.41 -5.61 15 4 O 0.09 1.39 11.17 17.32 0.19 1.59 15 5 C -0.06 -0.82 12.33 30.21 0.37 -0.45 15 6 C -0.10 -1.81 6.23 -104.78 -0.65 -2.46 15 7 C 0.04 0.77 7.06 -82.35 -0.58 0.19 15 8 C -0.26 -6.09 10.93 -38.84 -0.42 -6.51 15 9 C 0.19 5.21 6.77 -84.80 -0.57 4.64 15 10 C -0.45 -12.47 9.41 -37.78 -0.36 -12.82 15 11 H 0.08 2.06 7.84 -52.48 -0.41 1.65 15 12 C 0.07 1.94 5.49 -17.36 -0.10 1.85 15 13 N -0.78 -22.01 11.96 55.54 0.66 -21.34 15 14 Si 0.90 19.74 29.56 -169.99 -5.02 14.71 15 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 18 N -0.31 -8.39 10.47 32.29 0.34 -8.05 15 19 N -0.42 -9.39 6.91 33.32 0.23 -9.16 15 20 H 0.42 7.75 8.96 -190.45 -1.71 6.04 15 21 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 24 H 0.22 2.37 8.06 -52.48 -0.42 1.94 15 25 H 0.13 2.64 8.06 -52.49 -0.42 2.22 15 26 H 0.27 6.94 8.30 -40.82 -0.34 6.61 15 LS Contribution 245.05 15.07 3.69 3.69 Total: -1.00 -31.57 245.05 -5.41 -36.98 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -3.37 Total: 3.74 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -2.54 Total: -16.55 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 1.64 Total: -44.16 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.19 Total: 1.59 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.57 -5.41 -36.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259680293.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.635 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds