Wall clock time and date at job start Mon Mar 30 2020 20:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29992 * 126.87649 * 2 1 4 4 O 1.20830 * 112.01441 * 179.97438 * 3 2 1 5 5 C 1.33995 * 111.87479 * 359.73813 * 4 3 2 6 6 C 1.36790 * 106.22130 * 0.41239 * 5 4 3 7 7 C 1.48053 * 128.18391 * 179.89204 * 6 5 4 8 8 C 1.36366 * 126.47673 * 319.66656 * 7 6 5 9 9 C 1.41928 * 105.46499 * 180.02562 * 8 7 6 10 10 C 1.41446 * 126.44392 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99913 * 0.02562 * 10 9 8 12 12 C 1.39801 * 120.00289 * 179.97438 * 10 9 8 13 13 N 1.30916 * 119.99812 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00199 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47037 * 90.00250 * 14 12 10 16 16 H 1.48499 * 109.47105 * 210.00275 * 14 12 10 17 17 H 1.48503 * 109.47399 * 330.00388 * 14 12 10 18 18 N 1.32831 * 107.11180 * 359.75036 * 9 8 7 19 19 N 1.28451 * 110.24574 * 0.43130 * 18 9 8 20 20 H 0.97001 * 124.93851 * 179.82876 * 19 18 9 21 21 H 1.08995 * 109.47744 * 270.00832 * 1 2 3 22 22 H 1.09003 * 109.46713 * 30.00910 * 1 2 3 23 23 H 1.08997 * 109.46902 * 149.99863 * 1 2 3 24 24 H 1.08004 * 126.88890 * 180.27721 * 5 4 3 25 25 H 1.08000 * 127.27064 * 0.05152 * 8 7 6 26 26 H 0.96996 * 120.00459 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2871 1.0398 0.0000 4 8 3.4550 0.7299 0.0005 5 6 3.6186 -0.6000 0.0066 6 6 2.3616 -1.1396 0.0007 7 6 1.9797 -2.5701 0.0015 8 6 2.5821 -3.5704 -0.7027 9 6 1.8633 -4.7496 -0.3754 10 6 2.1184 -6.0521 -0.8643 11 1 2.9295 -6.2194 -1.5576 12 6 1.3214 -7.1231 -0.4494 13 7 0.3386 -6.9204 0.3913 14 14 1.6579 -8.8431 -1.0957 15 1 2.6174 -9.5314 -0.1951 16 1 0.3876 -9.6106 -1.1451 17 1 2.2363 -8.7548 -2.4606 18 7 0.9091 -4.4008 0.4803 19 7 0.9562 -3.1375 0.7078 20 1 0.3554 -2.6567 1.2985 21 1 -0.3634 0.0001 1.0276 22 1 -0.3633 0.8899 -0.5140 23 1 -0.3633 -0.8900 -0.5138 24 1 4.5551 -1.1380 0.0125 25 1 3.4279 -3.4838 -1.3687 26 1 -0.2147 -7.6633 0.6790 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259680293.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:20 Heat of formation + Delta-G solvation = 101.393605 kcal Electronic energy + Delta-G solvation = -13938.101011 eV Core-core repulsion = 11406.634131 eV Total energy + Delta-G solvation = -2531.466879 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.89801 -42.20602 -36.07334 -35.23241 -33.34643 -32.02903 -30.22322 -29.46215 -27.59237 -24.42278 -22.40086 -21.95789 -21.10483 -19.21187 -18.59101 -18.26994 -17.53183 -16.45701 -15.64853 -15.34515 -14.77359 -14.35067 -14.29797 -14.12448 -13.90024 -13.40339 -12.86635 -12.73484 -12.50087 -12.24458 -11.76027 -11.35698 -11.07648 -10.72483 -10.38761 -9.60320 -9.05121 -8.27845 -6.23881 0.39909 0.89690 1.44123 1.46770 1.60239 1.90251 2.24847 2.36689 2.39993 2.78184 3.21381 3.57105 3.63921 3.99391 4.24229 4.51616 4.54905 4.70273 4.72421 4.85673 5.09168 5.32489 5.36668 5.47528 5.84078 6.39584 6.90878 6.96971 7.24841 7.25578 8.27169 8.72107 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.065240 B = 0.006672 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.083575 B = 4195.435703 C = 4505.408129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.019 3.981 3 N -0.385 5.385 4 O 0.100 5.900 5 C -0.017 4.017 6 C -0.149 4.149 7 C 0.072 3.928 8 C -0.287 4.287 9 C 0.155 3.845 10 C -0.486 4.486 11 H 0.084 0.916 12 C 0.023 3.977 13 N -0.824 5.824 14 Si 0.983 3.017 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.257 1.257 18 N -0.352 5.352 19 N -0.422 5.422 20 H 0.430 0.570 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.072 0.928 24 H 0.257 0.743 25 H 0.145 0.855 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 9.452 -0.353 10.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 N -0.092 5.092 4 O 0.038 5.962 5 C -0.100 4.100 6 C -0.154 4.154 7 C -0.056 4.056 8 C -0.317 4.317 9 C 0.006 3.994 10 C -0.524 4.524 11 H 0.102 0.898 12 C -0.190 4.190 13 N -0.454 5.454 14 Si 0.805 3.195 15 H -0.192 1.192 16 H -0.202 1.202 17 H -0.181 1.181 18 N -0.186 5.186 19 N -0.131 5.131 20 H 0.272 0.728 21 H 0.115 0.885 22 H 0.111 0.889 23 H 0.091 0.909 24 H 0.273 0.727 25 H 0.163 0.837 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.120 10.266 0.402 10.490 hybrid contribution 0.270 -1.178 -0.353 1.259 sum 2.390 9.088 0.049 9.397 Atomic orbital electron populations 1.20276 0.84680 1.04175 1.04450 1.24023 0.99978 0.87790 1.02279 1.73617 0.89930 1.24340 1.21343 1.84727 1.20764 1.23372 1.67290 1.26653 1.00943 0.82376 0.99981 1.19203 0.93821 0.91035 1.11387 1.18623 0.95567 0.89901 1.01519 1.21780 1.07259 0.92217 1.10487 1.19650 0.91478 0.94587 0.93682 1.18942 1.15982 0.90532 1.26974 0.89769 1.26665 0.93691 1.04600 0.94086 1.70087 1.15152 1.33472 1.26700 0.85192 0.78135 0.76646 0.79516 1.19196 1.20201 1.18071 1.74611 1.26716 0.92568 1.24733 1.43729 1.25941 1.06102 1.37303 0.72768 0.88532 0.88945 0.90943 0.72710 0.83736 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.93 10.40 71.24 0.74 -1.19 15 2 C 0.02 0.57 7.37 43.88 0.32 0.89 15 3 N -0.38 -11.42 12.03 -48.38 -0.58 -12.00 15 4 O 0.10 2.66 11.17 72.17 0.81 3.46 15 5 C -0.02 -0.42 12.33 67.48 0.83 0.41 15 6 C -0.15 -4.81 6.23 -19.96 -0.12 -4.93 15 7 C 0.07 2.96 7.06 40.55 0.29 3.24 15 8 C -0.29 -13.36 10.93 22.75 0.25 -13.11 15 9 C 0.15 8.64 6.77 40.70 0.28 8.91 15 10 C -0.49 -27.42 9.41 23.44 0.22 -27.20 15 11 H 0.08 4.45 7.84 -2.91 -0.02 4.42 15 12 C 0.02 1.27 5.49 85.21 0.47 1.74 15 13 N -0.82 -47.43 11.96 21.80 0.26 -47.17 15 14 Si 0.98 40.86 29.56 68.60 2.03 42.89 15 15 H -0.27 -10.69 7.11 99.48 0.71 -9.98 15 16 H -0.28 -11.16 7.11 99.48 0.71 -10.45 15 17 H -0.26 -10.18 7.11 99.48 0.71 -9.48 15 18 N -0.35 -19.45 10.47 -51.76 -0.54 -19.99 15 19 N -0.42 -18.71 6.91 -48.48 -0.33 -19.04 15 20 H 0.43 15.93 8.96 -220.00 -1.97 13.96 15 21 H 0.10 2.00 8.14 -2.39 -0.02 1.98 15 22 H 0.09 1.95 8.14 -2.39 -0.02 1.94 15 23 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 24 H 0.26 4.35 8.06 -2.91 -0.02 4.33 15 25 H 0.14 5.94 8.06 -2.91 -0.02 5.92 15 26 H 0.27 14.37 8.30 -92.71 -0.77 13.60 15 Total: -1.00 -69.07 245.05 4.16 -64.91 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -0.75 Total: 18.17 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 3.27 Total: -31.23 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -1.20 Total: -98.20 kcal Atomic # 8 Polarization: 2.66 SS G_CDS: 0.81 Total: 3.46 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -69.07 4.16 -64.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259680293.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.305 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds