Wall clock time and date at job start Mon Mar 30 2020 20:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 7 12 12 N 1.30060 * 124.84113 * 89.99899 * 11 10 9 13 13 C 1.35513 * 108.70793 * 180.02562 * 12 11 10 14 14 C 1.39804 * 135.10973 * 179.97438 * 13 12 11 15 15 C 1.38192 * 117.50953 * 179.97438 * 14 13 12 16 16 N 1.32198 * 120.17230 * 0.03344 * 15 14 13 17 17 N 1.28465 * 122.91321 * 359.97438 * 16 15 14 18 18 C 1.32111 * 121.85230 * 359.97438 * 17 16 15 19 19 O 1.34228 * 124.84515 * 269.70187 * 11 10 9 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 24 24 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 25 25 H 1.08004 * 121.24614 * 0.02562 * 14 13 12 26 26 H 1.07999 * 119.91052 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4918 -4.9672 -0.0033 12 7 1.1199 -5.6100 -1.0710 13 6 0.4687 -6.7373 -0.6949 14 6 -0.1450 -7.7980 -1.3679 15 6 -0.7192 -8.7938 -0.6009 16 7 -0.6776 -8.7236 0.7185 17 7 -0.1171 -7.7545 1.3486 18 6 0.4623 -6.7519 0.7127 19 8 1.1137 -5.6349 1.0980 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6247 -2.5562 -0.8920 23 1 2.8720 -3.6035 -0.8927 24 1 2.8719 -3.6051 0.8873 25 1 -0.1686 -7.8381 -2.4470 26 1 -1.2033 -9.6315 -1.0807 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259680438.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:21 Heat of formation + Delta-G solvation = 67.691821 kcal Electronic energy + Delta-G solvation = -13664.715106 eV Core-core repulsion = 11131.786807 eV Total energy + Delta-G solvation = -2532.928298 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.51314 -40.11978 -35.32270 -34.28975 -32.56297 -32.17644 -30.31258 -26.46747 -24.62823 -23.82095 -22.26884 -20.89890 -19.38388 -18.02104 -17.17208 -16.50971 -16.16294 -14.81444 -14.61943 -14.23382 -13.81673 -13.76857 -13.19942 -12.51295 -12.16245 -11.64220 -11.48737 -11.12155 -11.00410 -10.77194 -10.28668 -10.02880 -9.83669 -9.76093 -9.39768 -8.99849 -8.53360 -6.17201 -4.22757 0.12937 0.76544 1.97187 2.35613 3.23470 3.31318 3.34358 3.36834 3.60065 3.85615 4.16284 4.33230 4.47010 4.79999 5.17440 5.19721 5.43806 5.63080 5.74617 5.87584 6.00302 6.06531 6.45186 7.35062 7.38093 7.52725 7.77327 8.10875 8.42073 8.82357 9.42863 10.94020 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.072882 B = 0.005471 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.089247 B = 5116.932395 C = 5131.746068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.036 4.036 11 C 0.328 3.672 12 N -0.495 5.495 13 C 0.037 3.963 14 C -0.070 4.070 15 C 0.025 3.975 16 N -0.213 5.213 17 N -0.192 5.192 18 C 0.144 3.856 19 O -0.195 6.195 20 H 0.264 0.736 21 H 0.025 0.975 22 H 0.029 0.971 23 H 0.110 0.890 24 H 0.096 0.904 25 H 0.161 0.839 26 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 -13.009 -2.557 13.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.566 4.566 8 H 0.082 0.918 9 C -0.012 4.012 10 C -0.074 4.074 11 C 0.117 3.883 12 N -0.224 5.224 13 C -0.085 4.085 14 C -0.100 4.100 15 C -0.135 4.135 16 N -0.062 5.062 17 N -0.048 5.048 18 C -0.043 4.043 19 O -0.082 6.082 20 H 0.073 0.927 21 H 0.044 0.956 22 H 0.048 0.952 23 H 0.128 0.872 24 H 0.114 0.886 25 H 0.179 0.821 26 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.804 -13.325 -1.753 13.464 hybrid contribution 0.487 1.307 -0.764 1.590 sum 1.291 -12.018 -2.517 12.347 Atomic orbital electron populations 1.69971 1.06192 1.27041 1.49606 1.25022 0.94898 0.99552 0.94764 0.86420 0.80024 0.83167 0.77719 1.19513 1.20863 1.20873 1.21067 0.93235 0.89983 1.52302 0.91831 1.19218 0.93537 0.89643 0.98758 1.21086 0.98217 0.83031 1.05075 1.28197 0.89425 0.94072 0.76646 1.70811 1.17827 1.05234 1.28545 1.20893 0.99158 0.95767 0.92731 1.21582 0.95115 0.90664 1.02685 1.24081 0.98411 0.99396 0.91576 1.73263 1.10917 1.12737 1.09323 1.72898 1.05528 0.95933 1.30422 1.22543 0.98611 0.90852 0.92247 1.84629 1.58644 1.28215 1.36722 0.92676 0.95635 0.95219 0.87160 0.88559 0.82121 0.79722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 13.29 55.43 0.74 -24.98 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 7 C -0.53 -13.79 9.11 -34.44 -0.31 -14.10 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.03 0.64 4.96 -27.88 -0.14 0.50 15 10 C -0.04 -0.66 5.78 -27.88 -0.16 -0.83 15 11 C 0.33 6.11 7.49 -13.03 -0.10 6.01 15 12 N -0.49 -9.16 11.33 -8.63 -0.10 -9.26 15 13 C 0.04 0.63 7.32 -84.70 -0.62 0.01 15 14 C -0.07 -0.85 10.26 -39.01 -0.40 -1.25 15 15 C 0.02 0.27 11.29 -17.41 -0.20 0.08 15 16 N -0.21 -3.13 11.48 30.51 0.35 -2.78 15 17 N -0.19 -3.35 11.53 30.63 0.35 -3.00 15 18 C 0.14 2.61 8.71 -16.48 -0.14 2.46 15 19 O -0.20 -3.70 10.76 4.18 0.04 -3.65 15 20 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 21 H 0.03 0.66 8.14 -51.93 -0.42 0.23 15 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.11 1.87 8.14 -51.93 -0.42 1.45 15 24 H 0.10 1.60 8.14 -51.93 -0.42 1.17 15 25 H 0.16 1.42 8.06 -52.48 -0.42 1.00 15 26 H 0.19 1.12 8.06 -52.49 -0.42 0.69 15 LS Contribution 244.35 15.07 3.68 3.68 Total: -1.00 -30.63 244.35 -4.20 -34.82 By element: Atomic # 1 Polarization: -2.71 SS G_CDS: -2.08 Total: -4.79 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.17 Total: -5.59 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 1.34 Total: -40.02 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.65 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.63 -4.20 -34.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259680438.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.516 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds