Wall clock time and date at job start Mon Mar 30 2020 20:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 7 12 12 N 1.30060 * 124.84113 * 89.99899 * 11 10 9 13 13 C 1.35513 * 108.70793 * 180.02562 * 12 11 10 14 14 C 1.39804 * 135.10973 * 179.97438 * 13 12 11 15 15 C 1.38192 * 117.50953 * 179.97438 * 14 13 12 16 16 N 1.32198 * 120.17230 * 0.03344 * 15 14 13 17 17 N 1.28465 * 122.91321 * 359.97438 * 16 15 14 18 18 C 1.32111 * 121.85230 * 359.97438 * 17 16 15 19 19 O 1.34228 * 124.84515 * 269.70187 * 11 10 9 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 22 22 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 23 23 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 24 24 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 25 25 H 1.08004 * 121.24614 * 0.02562 * 14 13 12 26 26 H 1.07999 * 119.91052 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4918 -4.9672 -0.0033 12 7 1.1199 -5.6100 -1.0710 13 6 0.4687 -6.7373 -0.6949 14 6 -0.1450 -7.7980 -1.3679 15 6 -0.7192 -8.7938 -0.6009 16 7 -0.6776 -8.7236 0.7185 17 7 -0.1171 -7.7545 1.3486 18 6 0.4623 -6.7519 0.7127 19 8 1.1137 -5.6349 1.0980 20 1 -0.4849 0.8400 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6247 -2.5562 -0.8920 23 1 2.8720 -3.6035 -0.8927 24 1 2.8719 -3.6051 0.8873 25 1 -0.1686 -7.8381 -2.4470 26 1 -1.2033 -9.6315 -1.0807 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259680438.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:21 Heat of formation + Delta-G solvation = 42.884337 kcal Electronic energy + Delta-G solvation = -13665.790839 eV Core-core repulsion = 11131.786807 eV Total energy + Delta-G solvation = -2534.004032 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 219.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.80622 -41.29465 -36.70476 -36.00781 -33.97800 -33.62316 -31.76895 -28.20642 -25.86061 -25.24128 -23.79982 -22.46938 -20.64679 -19.27039 -18.67059 -18.29195 -17.27620 -16.52718 -15.99720 -15.48126 -15.32187 -14.92054 -14.78290 -14.28117 -13.62335 -13.24205 -12.90184 -12.81697 -12.52801 -12.34150 -12.03242 -11.84204 -11.35994 -11.00456 -10.93685 -10.60749 -10.32483 -8.23431 -6.35826 -1.06814 -0.35383 0.68476 1.01400 1.44645 1.45566 1.58522 2.23560 2.34216 2.44244 2.68885 2.98068 3.12391 3.48047 3.74174 4.11185 4.24112 4.41312 4.43996 4.54589 4.59478 4.86166 4.99178 5.38323 5.44082 5.73967 6.08329 6.12700 6.79949 7.27692 7.34768 8.89270 Molecular weight = 219.07amu Principal moments of inertia in cm(-1) A = 0.072882 B = 0.005471 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.089247 B = 5116.932395 C = 5131.746068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.538 4.538 8 H 0.081 0.919 9 C 0.032 3.968 10 C -0.020 4.020 11 C 0.311 3.689 12 N -0.501 5.501 13 C 0.005 3.995 14 C -0.043 4.043 15 C 0.045 3.955 16 N -0.225 5.225 17 N -0.223 5.223 18 C 0.121 3.879 19 O -0.212 6.212 20 H 0.264 0.736 21 H -0.005 1.005 22 H -0.001 1.001 23 H 0.128 0.872 24 H 0.115 0.885 25 H 0.204 0.796 26 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.812 -14.326 -3.861 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.099 0.901 9 C -0.006 4.006 10 C -0.058 4.058 11 C 0.099 3.901 12 N -0.231 5.231 13 C -0.117 4.117 14 C -0.074 4.074 15 C -0.115 4.115 16 N -0.072 5.072 17 N -0.079 5.079 18 C -0.065 4.065 19 O -0.099 6.099 20 H 0.073 0.927 21 H 0.013 0.987 22 H 0.018 0.982 23 H 0.146 0.854 24 H 0.134 0.866 25 H 0.221 0.779 26 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 1.434 -14.666 -3.043 15.046 hybrid contribution 0.169 1.489 -0.433 1.560 sum 1.603 -13.177 -3.475 13.722 Atomic orbital electron populations 1.70119 1.08114 1.27973 1.51301 1.26020 0.95694 1.03687 0.94482 0.85298 0.79411 0.78277 0.77456 1.17672 1.20721 1.20846 1.21582 0.94251 0.90775 1.50999 0.90136 1.18985 0.93988 0.91833 0.95798 1.20790 0.96910 0.81203 1.06921 1.27969 0.90690 0.94568 0.76904 1.70724 1.17756 1.05945 1.28662 1.21355 1.00903 0.96761 0.92679 1.22248 0.91890 0.88424 1.04803 1.24988 0.96454 1.00091 0.89989 1.73182 1.10538 1.11911 1.11601 1.72903 1.06779 0.96535 1.31647 1.22769 0.99449 0.91004 0.93272 1.84554 1.59211 1.29005 1.37113 0.92704 0.98709 0.98223 0.85406 0.86641 0.77939 0.73860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.58 13.29 21.45 0.28 -55.30 15 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 15 3 Si 0.97 42.18 29.54 68.60 2.03 44.21 15 4 H -0.25 -10.19 7.11 99.48 0.71 -9.48 15 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 15 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 7 C -0.54 -28.30 9.11 25.60 0.23 -28.06 15 8 H 0.08 3.86 7.74 -2.91 -0.02 3.84 15 9 C 0.03 1.60 4.96 29.85 0.15 1.75 15 10 C -0.02 -0.76 5.78 29.85 0.17 -0.59 15 11 C 0.31 11.83 7.49 88.37 0.66 12.49 15 12 N -0.50 -18.49 11.33 -295.95 -3.35 -21.85 15 13 C 0.00 0.15 7.32 39.57 0.29 0.44 15 14 C -0.04 -0.89 10.26 22.64 0.23 -0.66 15 15 C 0.04 0.79 11.29 84.63 0.96 1.74 15 16 N -0.22 -6.13 11.48 -57.38 -0.66 -6.79 15 17 N -0.22 -7.73 11.53 -170.35 -1.96 -9.70 15 18 C 0.12 4.42 8.71 85.27 0.74 5.17 15 19 O -0.21 -8.32 10.76 -7.95 -0.09 -8.40 15 20 H 0.26 14.77 8.31 -92.71 -0.77 14.00 15 21 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 15 22 H 0.00 -0.04 8.14 -2.39 -0.02 -0.05 15 23 H 0.13 4.26 8.14 -2.39 -0.02 4.24 15 24 H 0.12 3.80 8.14 -2.39 -0.02 3.78 15 25 H 0.20 2.47 8.06 -2.91 -0.02 2.45 15 26 H 0.25 1.31 8.06 -2.91 -0.02 1.29 15 Total: -1.00 -69.56 244.35 1.35 -68.21 By element: Atomic # 1 Polarization: -4.29 SS G_CDS: 1.20 Total: -3.08 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 3.90 Total: -7.31 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -5.69 Total: -93.63 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.09 Total: -8.40 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -69.56 1.35 -68.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259680438.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.094 kcal (2) G-P(sol) polarization free energy of solvation -69.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds