Wall clock time and date at job start Mon Mar 30 2020 20:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99997 * 2 1 4 4 H 1.48498 * 109.47412 * 270.00063 * 3 2 1 5 5 H 1.48507 * 109.47081 * 30.00612 * 3 2 1 6 6 H 1.48500 * 109.47025 * 149.99892 * 3 2 1 7 7 C 1.37878 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00244 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99420 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.83352 * 60.83678 * 9 7 2 11 11 C 1.53436 * 109.79019 * 181.66063 * 9 7 2 12 12 C 1.52867 * 108.83226 * 182.80730 * 11 9 7 13 13 H 1.08998 * 109.30001 * 68.98357 * 12 11 9 14 14 O 1.42898 * 109.29864 * 188.56519 * 12 11 9 15 15 C 1.50596 * 110.48296 * 308.67052 * 12 11 9 16 16 C 1.38501 * 118.92928 * 200.48862 * 15 12 11 17 17 C 1.38119 * 120.30835 * 180.14564 * 16 15 12 18 18 C 1.38311 * 120.16027 * 359.97438 * 17 16 15 19 19 C 1.38018 * 119.90932 * 359.95854 * 18 17 16 20 20 C 1.38495 * 121.47765 * 20.24898 * 15 12 11 21 21 N 1.39917 * 120.92803 * 0.30352 * 20 15 12 22 22 H 0.97000 * 119.99913 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.58105 * 302.61122 * 11 9 7 24 24 H 1.08998 * 109.57738 * 62.87392 * 11 9 7 25 25 H 0.96704 * 113.99657 * 179.97438 * 14 12 11 26 26 H 1.08000 * 119.84655 * 0.12007 * 16 15 12 27 27 H 1.08005 * 119.92197 * 180.02562 * 17 16 15 28 28 H 1.08003 * 120.04355 * 179.97438 * 18 17 16 29 29 H 1.08000 * 119.98234 * 180.02562 * 19 18 17 30 30 H 0.97001 * 120.54156 * 193.07096 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8817 -0.6946 0.8942 11 6 4.0311 -2.6371 -0.0435 12 6 5.5579 -2.6142 0.0275 13 1 5.8675 -2.2842 1.0191 14 8 6.0616 -3.9300 -0.2111 15 6 6.1195 -1.6754 -1.0075 16 6 7.4397 -1.8228 -1.3996 17 6 7.9848 -0.9756 -2.3445 18 6 7.2145 0.0264 -2.9064 19 6 5.8977 0.1793 -2.5224 20 6 5.3449 -0.6772 -1.5747 21 7 4.0087 -0.5026 -1.1983 22 1 -0.4850 0.8401 0.0004 23 1 3.6343 -3.1933 0.8058 24 1 3.7138 -3.1125 -0.9716 25 1 7.0262 -3.9932 -0.1820 26 1 8.0458 -2.6034 -0.9642 27 1 9.0149 -1.0964 -2.6461 28 1 7.6428 0.6880 -3.6448 29 1 5.2950 0.9611 -2.9606 30 1 3.4190 0.0626 -1.7216 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260236822.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:16 Heat of formation + Delta-G solvation = -25.514886 kcal Electronic energy + Delta-G solvation = -14799.813444 eV Core-core repulsion = 12366.383743 eV Total energy + Delta-G solvation = -2433.429701 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.70773 -36.51434 -35.76277 -32.59912 -31.34242 -30.03517 -28.81689 -25.89179 -23.10893 -21.85611 -21.71130 -18.96003 -17.51151 -17.10841 -16.37232 -15.60957 -15.25521 -14.29371 -14.05953 -13.57872 -13.35958 -12.93610 -12.75235 -12.62904 -12.18040 -11.77786 -11.10777 -10.98351 -10.85232 -10.66693 -10.33477 -9.95368 -9.74015 -9.55042 -9.14178 -8.88855 -8.37269 -6.67736 -6.34650 -4.43026 1.77323 2.08533 3.09799 3.23039 3.30767 4.16000 4.22188 4.29815 4.75695 5.09036 5.15784 5.22612 5.42783 5.56005 5.70742 5.85595 6.02359 6.15898 6.31217 6.39622 6.46640 6.69768 6.77103 6.90925 6.98877 7.11576 7.26022 7.38039 7.94207 8.14710 8.18817 8.63183 8.72138 9.22847 10.75572 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032494 B = 0.011328 C = 0.008860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.500318 B = 2471.123619 C = 3159.628727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.077 3.923 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.523 4.523 8 H 0.086 0.914 9 C 0.239 3.761 10 H 0.036 0.964 11 C -0.108 4.108 12 C 0.153 3.847 13 H 0.055 0.945 14 O -0.562 6.562 15 C -0.199 4.199 16 C -0.070 4.070 17 C -0.199 4.199 18 C -0.073 4.073 19 C -0.212 4.212 20 C 0.240 3.760 21 N -0.733 5.733 22 H 0.269 0.731 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.367 0.633 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.109 -0.505 -2.162 13.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.128 4.128 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.183 1.183 7 C -0.562 4.562 8 H 0.104 0.896 9 C 0.138 3.862 10 H 0.053 0.947 11 C -0.146 4.146 12 C 0.095 3.905 13 H 0.073 0.927 14 O -0.367 6.367 15 C -0.205 4.205 16 C -0.089 4.089 17 C -0.219 4.219 18 C -0.092 4.092 19 C -0.235 4.235 20 C 0.131 3.869 21 N -0.362 5.362 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.213 0.787 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 12.157 -0.628 -2.001 12.336 hybrid contribution 0.743 1.378 -0.334 1.601 sum 12.900 0.750 -2.335 13.131 Atomic orbital electron populations 1.69888 1.06324 1.27626 1.47880 1.25098 0.94869 0.99336 0.93526 0.86842 0.80547 0.83081 0.78716 1.20350 1.21631 1.18344 1.21105 0.87843 0.95260 1.51962 0.89639 1.19340 0.95040 0.87844 0.83980 0.94652 1.21717 0.90539 0.99159 1.03196 1.20573 0.95404 0.80344 0.94174 0.92736 1.86579 1.25425 1.29576 1.95142 1.19904 0.95052 1.00099 1.05396 1.20596 0.93658 0.97915 0.96696 1.20595 0.99725 0.99514 1.02078 1.20764 0.93419 0.97012 0.98000 1.20753 0.96421 1.02260 1.04029 1.17925 0.86014 0.91311 0.91613 1.46945 1.06523 1.52181 1.30589 0.92071 0.90720 0.91141 0.78672 0.87150 0.87160 0.86920 0.86795 0.77096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.49 13.96 55.43 0.77 -24.71 16 2 C 0.08 2.10 5.42 -17.82 -0.10 2.01 16 3 Si 0.88 20.66 25.07 -169.99 -4.26 16.40 16 4 H -0.28 -6.25 7.03 56.52 0.40 -5.86 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -6.04 6.57 56.52 0.37 -5.67 16 7 C -0.52 -13.96 9.30 -34.44 -0.32 -14.28 16 8 H 0.09 2.47 8.00 -52.49 -0.42 2.05 16 9 C 0.24 5.51 2.24 -68.62 -0.15 5.35 16 10 H 0.04 0.84 7.27 -51.93 -0.38 0.46 16 11 C -0.11 -2.24 5.00 -26.57 -0.13 -2.37 16 12 C 0.15 2.77 3.58 -28.00 -0.10 2.67 16 13 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 14 O -0.56 -9.24 13.14 -35.23 -0.46 -9.71 16 15 C -0.20 -3.64 5.60 -104.48 -0.59 -4.23 16 16 C -0.07 -1.07 9.26 -39.53 -0.37 -1.44 16 17 C -0.20 -2.89 10.04 -39.60 -0.40 -3.29 16 18 C -0.07 -1.11 10.05 -39.64 -0.40 -1.51 16 19 C -0.21 -3.74 9.88 -39.31 -0.39 -4.13 16 20 C 0.24 4.77 6.47 -83.72 -0.54 4.23 16 21 N -0.73 -16.06 4.41 -52.76 -0.23 -16.29 16 22 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 24 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 25 H 0.37 4.32 7.34 45.56 0.33 4.65 16 26 H 0.11 1.32 6.60 -52.49 -0.35 0.98 16 27 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 28 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 29 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.39 8.72 6.25 -40.82 -0.26 8.46 16 LS Contribution 246.49 15.07 3.71 3.71 Total: -1.00 -29.22 246.49 -6.72 -35.95 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -2.77 Total: 11.65 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -3.48 Total: -17.00 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.54 Total: -41.01 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.46 Total: -9.71 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.26 Total: 16.40 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.22 -6.72 -35.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260236822.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.431 kcal (2) G-P(sol) polarization free energy of solvation -29.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds