Wall clock time and date at job start Mon Mar 30 2020 20:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99997 * 2 1 4 4 H 1.48498 * 109.47412 * 270.00063 * 3 2 1 5 5 H 1.48507 * 109.47081 * 30.00612 * 3 2 1 6 6 H 1.48500 * 109.47025 * 149.99892 * 3 2 1 7 7 C 1.37878 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00244 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99420 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.83352 * 60.83678 * 9 7 2 11 11 C 1.53436 * 109.79019 * 181.66063 * 9 7 2 12 12 C 1.52867 * 108.83226 * 182.80730 * 11 9 7 13 13 H 1.08998 * 109.30001 * 68.98357 * 12 11 9 14 14 O 1.42898 * 109.29864 * 188.56519 * 12 11 9 15 15 C 1.50596 * 110.48296 * 308.67052 * 12 11 9 16 16 C 1.38501 * 118.92928 * 200.48862 * 15 12 11 17 17 C 1.38119 * 120.30835 * 180.14564 * 16 15 12 18 18 C 1.38311 * 120.16027 * 359.97438 * 17 16 15 19 19 C 1.38018 * 119.90932 * 359.95854 * 18 17 16 20 20 C 1.38495 * 121.47765 * 20.24898 * 15 12 11 21 21 N 1.39917 * 120.92803 * 0.30352 * 20 15 12 22 22 H 0.97000 * 119.99913 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.58105 * 302.61122 * 11 9 7 24 24 H 1.08998 * 109.57738 * 62.87392 * 11 9 7 25 25 H 0.96704 * 113.99657 * 179.97438 * 14 12 11 26 26 H 1.08000 * 119.84655 * 0.12007 * 16 15 12 27 27 H 1.08005 * 119.92197 * 180.02562 * 17 16 15 28 28 H 1.08003 * 120.04355 * 179.97438 * 18 17 16 29 29 H 1.08000 * 119.98234 * 180.02562 * 19 18 17 30 30 H 0.97001 * 120.54156 * 193.07096 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8817 -0.6946 0.8942 11 6 4.0311 -2.6371 -0.0435 12 6 5.5579 -2.6142 0.0275 13 1 5.8675 -2.2842 1.0191 14 8 6.0616 -3.9300 -0.2111 15 6 6.1195 -1.6754 -1.0075 16 6 7.4397 -1.8228 -1.3996 17 6 7.9848 -0.9756 -2.3445 18 6 7.2145 0.0264 -2.9064 19 6 5.8977 0.1793 -2.5224 20 6 5.3449 -0.6772 -1.5747 21 7 4.0087 -0.5026 -1.1983 22 1 -0.4850 0.8401 0.0004 23 1 3.6343 -3.1933 0.8058 24 1 3.7138 -3.1125 -0.9716 25 1 7.0262 -3.9932 -0.1820 26 1 8.0458 -2.6034 -0.9642 27 1 9.0149 -1.0964 -2.6461 28 1 7.6428 0.6880 -3.6448 29 1 5.2950 0.9611 -2.9606 30 1 3.4190 0.0626 -1.7216 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260236822.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:16 Heat of formation + Delta-G solvation = -46.858018 kcal Electronic energy + Delta-G solvation = -14800.738952 eV Core-core repulsion = 12366.383743 eV Total energy + Delta-G solvation = -2434.355209 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.09417 -37.84461 -37.31391 -34.57696 -32.76070 -31.53183 -30.23988 -27.66962 -24.62173 -23.39376 -23.10145 -20.48201 -19.16231 -18.82362 -17.81828 -16.98638 -16.81549 -15.96586 -15.51622 -14.99180 -14.90705 -14.59092 -14.40212 -14.07930 -13.69829 -13.09945 -12.90314 -12.55966 -12.26848 -12.10208 -12.04749 -11.89898 -11.42476 -11.00400 -10.89999 -10.70090 -9.62579 -8.46772 -8.16108 -6.58778 0.52512 0.79680 1.23559 1.31213 1.44776 2.19788 2.59885 2.94707 3.12210 3.46208 3.82839 3.92959 4.21356 4.24403 4.32774 4.58555 4.64762 4.70731 4.82352 4.84345 5.12911 5.15615 5.32515 5.36590 5.49162 5.65220 5.75984 6.08699 6.13766 6.46481 6.66895 6.88333 6.98582 7.12083 8.68946 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032494 B = 0.011328 C = 0.008860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.500318 B = 2471.123619 C = 3159.628727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.029 3.971 3 Si 0.947 3.053 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.255 1.255 7 C -0.533 4.533 8 H 0.045 0.955 9 C 0.249 3.751 10 H 0.030 0.970 11 C -0.105 4.105 12 C 0.162 3.838 13 H 0.068 0.932 14 O -0.569 6.569 15 C -0.217 4.217 16 C -0.069 4.069 17 C -0.186 4.186 18 C -0.072 4.072 19 C -0.224 4.224 20 C 0.204 3.796 21 N -0.748 5.748 22 H 0.272 0.728 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.390 0.610 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.116 0.884 30 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.925 0.109 -2.910 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.172 4.172 3 Si 0.772 3.228 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.179 1.179 7 C -0.571 4.571 8 H 0.064 0.936 9 C 0.147 3.853 10 H 0.048 0.952 11 C -0.144 4.144 12 C 0.104 3.896 13 H 0.086 0.914 14 O -0.378 6.378 15 C -0.222 4.222 16 C -0.087 4.087 17 C -0.206 4.206 18 C -0.090 4.090 19 C -0.247 4.247 20 C 0.099 3.901 21 N -0.379 5.379 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.240 0.760 26 H 0.165 0.835 27 H 0.166 0.834 28 H 0.163 0.837 29 H 0.134 0.866 30 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 16.044 -0.038 -2.769 16.281 hybrid contribution -0.314 1.065 -0.173 1.124 sum 15.729 1.027 -2.942 16.035 Atomic orbital electron populations 1.70017 1.08081 1.28707 1.49898 1.25858 0.95479 1.02858 0.93025 0.85770 0.79044 0.78482 0.79468 1.18690 1.21672 1.17901 1.21273 0.90170 0.93865 1.51800 0.93627 1.18990 0.92471 0.89323 0.84522 0.95208 1.21588 0.93485 0.97516 1.01788 1.20295 0.93023 0.81207 0.95095 0.91429 1.86531 1.27697 1.28449 1.95132 1.20114 0.96461 0.99903 1.05738 1.21030 0.92580 0.98727 0.96395 1.21121 1.01258 0.97902 1.00322 1.21191 0.92273 0.97491 0.98080 1.20957 0.97798 1.02156 1.03744 1.18237 0.85126 0.93187 0.93558 1.46427 1.07830 1.53131 1.30550 0.91836 0.91086 0.93408 0.75995 0.83469 0.83399 0.83681 0.86602 0.77804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.96 21.45 0.30 -55.62 16 2 C 0.03 1.63 5.42 84.65 0.46 2.09 16 3 Si 0.95 43.57 25.07 68.60 1.72 45.29 16 4 H -0.26 -11.27 7.03 99.48 0.70 -10.57 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.25 -11.46 6.57 99.48 0.65 -10.80 16 7 C -0.53 -29.86 9.30 25.60 0.24 -29.62 16 8 H 0.05 2.83 8.00 -2.91 -0.02 2.81 16 9 C 0.25 11.76 2.24 44.31 0.10 11.86 16 10 H 0.03 1.44 7.27 -2.39 -0.02 1.42 16 11 C -0.11 -4.48 5.00 30.70 0.15 -4.32 16 12 C 0.16 5.62 3.58 29.77 0.11 5.72 16 13 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 14 O -0.57 -17.30 13.14 -148.98 -1.96 -19.26 16 15 C -0.22 -7.41 5.60 -19.77 -0.11 -7.52 16 16 C -0.07 -1.79 9.26 22.30 0.21 -1.58 16 17 C -0.19 -4.39 10.04 22.26 0.22 -4.16 16 18 C -0.07 -1.87 10.05 22.23 0.22 -1.64 16 19 C -0.22 -7.39 9.88 22.45 0.22 -7.17 16 20 C 0.20 7.83 6.47 38.14 0.25 8.08 16 21 N -0.75 -32.92 4.41 -320.85 -1.41 -34.33 16 22 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 23 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 24 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.39 7.59 7.34 -74.05 -0.54 7.05 16 26 H 0.15 2.66 6.60 -2.91 -0.02 2.64 16 27 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 28 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 29 H 0.12 3.67 8.06 -2.91 -0.02 3.64 16 30 H 0.39 17.36 6.25 -92.71 -0.58 16.78 16 Total: -1.00 -65.47 246.49 0.69 -64.78 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.02 Total: 27.41 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 2.07 Total: -28.27 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -1.12 Total: -89.95 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -1.96 Total: -19.26 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.72 Total: 45.29 kcal Total: -65.47 0.69 -64.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260236822.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.923 kcal (2) G-P(sol) polarization free energy of solvation -65.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds