Wall clock time and date at job start Mon Mar 30 2020 20:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00167 * 2 1 4 4 H 1.48501 * 109.47202 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46671 * 300.00157 * 3 2 1 6 6 H 1.48498 * 109.47087 * 60.00033 * 3 2 1 7 7 C 1.37877 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99822 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00297 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.78566 * 59.20057 * 9 7 2 11 11 C 1.53424 * 109.79743 * 179.97438 * 9 7 2 12 12 C 1.52856 * 108.84391 * 56.43567 * 11 9 7 13 13 H 1.09003 * 109.13663 * 291.11498 * 12 11 9 14 14 O 1.42906 * 109.30194 * 171.63810 * 12 11 9 15 15 C 1.50595 * 110.49036 * 51.32593 * 12 11 9 16 16 C 1.38503 * 118.93146 * 159.51664 * 15 12 11 17 17 C 1.38123 * 120.30340 * 180.02562 * 16 15 12 18 18 C 1.38312 * 120.16196 * 359.42430 * 17 16 15 19 19 C 1.38019 * 119.90736 * 0.59322 * 18 17 16 20 20 C 1.38605 * 121.50154 * 339.37247 * 15 12 11 21 21 N 1.39917 * 120.84472 * 0.43957 * 20 15 12 22 22 H 0.96999 * 120.00073 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.57885 * 296.62557 * 11 9 7 24 24 H 1.09002 * 109.57735 * 176.24058 * 11 9 7 25 25 H 0.96700 * 114.00295 * 178.96406 * 14 12 11 26 26 H 1.08002 * 119.84457 * 359.77008 * 16 15 12 27 27 H 1.08001 * 119.91360 * 179.68219 * 17 16 15 28 28 H 1.08000 * 120.04136 * 180.33375 * 18 17 16 29 29 H 1.08000 * 119.98033 * 179.79427 * 19 18 17 30 30 H 0.97003 * 120.54459 * 166.48967 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 1 0.6114 -2.5567 -0.8791 11 6 2.2415 -3.6709 0.0015 12 6 3.1719 -3.5311 1.2061 13 1 3.8244 -2.6710 1.0557 14 8 3.9677 -4.7119 1.3278 15 6 2.3743 -3.3362 2.4685 16 6 2.9706 -3.6136 3.6874 17 6 2.2650 -3.4453 4.8628 18 6 0.9605 -2.9867 4.8307 19 6 0.3586 -2.7082 3.6203 20 6 1.0643 -2.8846 2.4350 21 7 0.4338 -2.6021 1.2183 22 1 -0.4850 0.8400 0.0004 23 1 2.8280 -3.6532 -0.9170 24 1 1.6946 -4.6114 0.0696 25 1 4.5953 -4.6892 2.0631 26 1 3.9906 -3.9671 3.7187 27 1 2.7345 -3.6685 5.8095 28 1 0.4124 -2.8506 5.7513 29 1 -0.6611 -2.3532 3.5937 30 1 -0.5273 -2.4765 1.1786 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260236827.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:19 Heat of formation + Delta-G solvation = -47.280684 kcal Electronic energy + Delta-G solvation = -14985.552807 eV Core-core repulsion = 12551.179270 eV Total energy + Delta-G solvation = -2434.373537 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.90916 -37.73694 -37.02502 -34.21178 -32.60422 -31.13345 -29.84837 -27.42094 -24.71700 -23.47782 -22.92965 -20.48181 -18.92621 -18.13195 -17.53750 -16.86288 -16.53196 -16.31102 -15.22636 -14.84004 -14.58205 -14.40002 -14.14862 -13.63300 -13.29010 -12.97592 -12.92117 -12.80511 -12.42295 -11.97464 -11.92101 -11.70022 -11.40889 -10.69236 -10.63563 -10.46663 -9.47480 -8.29702 -7.77851 -6.32442 0.67046 1.00683 1.35386 1.39445 1.48658 2.37790 2.88455 3.13087 3.40300 3.59587 4.00346 4.08868 4.34017 4.39735 4.43240 4.74787 4.80703 4.96276 4.98778 5.09061 5.19381 5.26027 5.41910 5.67357 5.69801 5.80780 5.87950 6.13232 6.29272 6.66585 6.92126 7.00206 7.31486 7.43549 8.87183 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.026735 B = 0.011972 C = 0.010446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.056399 B = 2338.245254 C = 2679.821458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.033 3.967 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.287 1.287 7 C -0.541 4.541 8 H 0.056 0.944 9 C 0.270 3.730 10 H 0.032 0.968 11 C -0.109 4.109 12 C 0.173 3.827 13 H 0.051 0.949 14 O -0.574 6.574 15 C -0.214 4.214 16 C -0.076 4.076 17 C -0.202 4.202 18 C -0.076 4.076 19 C -0.232 4.232 20 C 0.233 3.767 21 N -0.718 5.718 22 H 0.261 0.739 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.386 0.614 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.110 0.890 30 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 -5.263 6.831 9.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.169 4.169 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.213 1.213 7 C -0.580 4.580 8 H 0.074 0.926 9 C 0.167 3.833 10 H 0.050 0.950 11 C -0.148 4.148 12 C 0.114 3.886 13 H 0.069 0.931 14 O -0.382 6.382 15 C -0.220 4.220 16 C -0.095 4.095 17 C -0.222 4.222 18 C -0.095 4.095 19 C -0.255 4.255 20 C 0.125 3.875 21 N -0.341 5.341 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.235 0.765 26 H 0.157 0.843 27 H 0.160 0.840 28 H 0.157 0.843 29 H 0.128 0.872 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.736 -5.317 6.067 8.890 hybrid contribution -0.080 1.469 0.218 1.487 sum 3.656 -3.848 6.285 8.227 Atomic orbital electron populations 1.69989 1.07009 1.27315 1.49917 1.25627 0.95544 1.02006 0.93751 0.85680 0.79380 0.80214 0.77395 1.19174 1.20331 1.21341 1.21757 0.93056 0.91716 1.51439 0.92576 1.18660 0.88863 0.91661 0.84136 0.94959 1.21669 0.97628 0.98274 0.97200 1.20071 0.90547 0.86140 0.91806 0.93130 1.86466 1.55061 1.40761 1.55898 1.20023 0.95219 1.10083 0.96669 1.20975 0.99873 0.97453 0.91178 1.20968 0.95391 1.07573 0.98278 1.21094 0.95430 0.96243 0.96741 1.20829 1.01199 1.11313 0.92178 1.17980 0.92023 0.90637 0.86874 1.45511 1.08476 1.74720 1.05413 0.92973 0.91165 0.93029 0.76457 0.84279 0.84032 0.84298 0.87158 0.78117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.92 12.86 21.45 0.28 -49.64 16 2 C 0.03 1.74 5.40 84.66 0.46 2.20 16 3 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.54 -28.54 7.86 25.60 0.20 -28.34 16 8 H 0.06 2.96 6.51 -2.91 -0.02 2.94 16 9 C 0.27 13.13 3.15 44.31 0.14 13.27 16 10 H 0.03 1.68 8.14 -2.38 -0.02 1.66 16 11 C -0.11 -4.68 5.31 30.69 0.16 -4.52 16 12 C 0.17 6.92 3.11 29.77 0.09 7.01 16 13 H 0.05 2.15 6.71 -2.39 -0.02 2.14 16 14 O -0.57 -19.63 13.13 -148.98 -1.96 -21.59 16 15 C -0.21 -8.66 5.55 -19.75 -0.11 -8.77 16 16 C -0.08 -2.50 9.27 22.31 0.21 -2.30 16 17 C -0.20 -6.09 10.04 22.26 0.22 -5.87 16 18 C -0.08 -2.47 10.05 22.24 0.22 -2.25 16 19 C -0.23 -9.07 9.88 22.42 0.22 -8.84 16 20 C 0.23 10.22 6.29 38.14 0.24 10.46 16 21 N -0.72 -33.62 4.90 -320.87 -1.57 -35.19 16 22 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 23 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 24 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.39 9.47 7.39 -74.06 -0.55 8.92 16 26 H 0.14 3.48 6.62 -2.91 -0.02 3.47 16 27 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 28 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 30 H 0.39 18.01 8.86 -92.71 -0.82 17.19 16 Total: -1.00 -59.81 250.66 0.63 -59.18 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.20 Total: 30.15 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 2.06 Total: -27.95 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -1.30 Total: -84.83 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -1.96 Total: -21.59 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -59.81 0.63 -59.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260236827.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.899 kcal (2) G-P(sol) polarization free energy of solvation -59.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds