Wall clock time and date at job start Mon Mar 30 2020 20:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00117 * 2 1 4 4 H 1.48500 * 109.47396 * 270.00611 * 3 2 1 5 5 H 1.48504 * 109.47007 * 30.00251 * 3 2 1 6 6 H 1.48496 * 109.47192 * 150.00023 * 3 2 1 7 7 C 1.37877 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99780 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00195 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.39171 * 300.00577 * 9 7 2 11 11 C 1.52891 * 109.38623 * 59.80634 * 9 7 2 12 12 N 1.47167 * 108.48749 * 170.47326 * 11 9 7 13 13 C 1.46635 * 110.24211 * 288.67554 * 12 11 9 14 14 C 1.50631 * 110.50027 * 52.49243 * 13 12 11 15 15 C 1.38653 * 118.37488 * 162.67275 * 14 13 12 16 16 C 1.38502 * 120.34160 * 179.84736 * 15 14 13 17 17 O 1.35892 * 120.12872 * 179.97438 * 16 15 14 18 18 C 1.38764 * 119.75103 * 359.97438 * 16 15 14 19 19 C 1.37932 * 119.76424 * 0.06747 * 18 16 15 20 20 C 1.37884 * 121.85184 * 342.61890 * 14 13 12 21 21 H 0.96992 * 119.99865 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.63299 * 290.16928 * 11 9 7 23 23 H 1.08996 * 109.63376 * 50.77690 * 11 9 7 24 24 H 1.00907 * 111.00145 * 165.26562 * 12 11 9 25 25 H 1.08999 * 109.26980 * 172.75616 * 13 12 11 26 26 H 1.08991 * 109.26797 * 292.26716 * 13 12 11 27 27 H 1.07994 * 119.83072 * 359.82672 * 15 14 13 28 28 H 0.96701 * 113.99793 * 90.00388 * 17 16 15 29 29 H 1.07994 * 120.12053 * 180.08864 * 18 16 15 30 30 H 1.08004 * 119.78787 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6251 -2.5557 0.8901 11 6 0.3687 -2.5757 -1.2468 12 7 -0.1779 -3.9383 -1.3486 13 6 0.8795 -4.8823 -1.7241 14 6 2.0581 -4.7511 -0.7953 15 6 2.9842 -5.7822 -0.7561 16 6 4.0849 -5.7026 0.0809 17 8 4.9896 -6.7159 0.1162 18 6 4.2604 -4.5841 0.8832 19 6 3.3368 -3.5604 0.8425 20 6 2.2338 -3.6421 0.0051 21 1 -0.4849 0.8400 0.0004 22 1 -0.4481 -1.8589 -1.1618 23 1 0.9647 -2.3531 -2.1318 24 1 -0.9433 -3.9728 -2.0053 25 1 0.4901 -5.8989 -1.6697 26 1 1.2015 -4.6745 -2.7444 27 1 2.8464 -6.6520 -1.3811 28 1 5.7133 -6.6194 -0.5179 29 1 5.1172 -4.5152 1.5369 30 1 3.4728 -2.6899 1.4671 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260310568.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:30 Heat of formation + Delta-G solvation = -21.861302 kcal Electronic energy + Delta-G solvation = -14624.328294 eV Core-core repulsion = 12191.057024 eV Total energy + Delta-G solvation = -2433.271270 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.53824 -37.36782 -34.83921 -33.45500 -31.03370 -29.85661 -27.71305 -25.18601 -23.39364 -22.11174 -21.20502 -19.01590 -17.41641 -16.54213 -15.80888 -15.28294 -14.67410 -14.51971 -14.07572 -13.64051 -13.30279 -12.88235 -12.36131 -12.16912 -11.80056 -11.56247 -11.10012 -11.02620 -10.69689 -10.43603 -10.17470 -9.98651 -9.49415 -9.01447 -8.54220 -8.27193 -7.62892 -7.58121 -6.10313 -4.16497 1.92831 1.95706 3.25041 3.32479 3.35378 4.22434 4.37658 4.63465 5.05826 5.27036 5.38238 5.48981 5.79379 5.88357 5.90164 6.06006 6.24379 6.47170 6.60283 6.67621 6.90156 6.95717 7.10780 7.24522 7.44771 7.55350 7.63451 7.87654 8.00377 8.04481 8.20225 8.33745 8.86663 9.48498 10.96346 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032280 B = 0.009800 C = 0.007837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.197157 B = 2856.574309 C = 3571.807497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.083 3.917 10 H 0.052 0.948 11 C 0.064 3.936 12 N -0.692 5.692 13 C 0.103 3.897 14 C -0.082 4.082 15 C -0.147 4.147 16 C 0.070 3.930 17 O -0.504 6.504 18 C -0.153 4.153 19 C -0.096 4.096 20 C -0.029 4.029 21 H 0.262 0.738 22 H 0.103 0.897 23 H 0.014 0.986 24 H 0.329 0.671 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.116 0.884 28 H 0.378 0.622 29 H 0.117 0.883 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 -7.363 -3.012 9.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.064 3.936 10 H 0.070 0.930 11 C -0.064 4.064 12 N -0.322 5.322 13 C -0.027 4.027 14 C -0.082 4.082 15 C -0.166 4.166 16 C 0.026 3.974 17 O -0.313 6.313 18 C -0.171 4.171 19 C -0.114 4.114 20 C -0.030 4.030 21 H 0.072 0.928 22 H 0.121 0.879 23 H 0.032 0.968 24 H 0.146 0.854 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.134 0.866 28 H 0.232 0.768 29 H 0.135 0.865 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.084 -7.578 -1.878 8.811 hybrid contribution 1.003 1.256 -1.381 2.119 sum 5.087 -6.322 -3.259 8.745 Atomic orbital electron populations 1.69878 1.05858 1.26757 1.50137 1.24993 0.94917 0.99183 0.94782 0.86550 0.79894 0.83229 0.78124 1.20712 1.21126 1.19804 1.21197 0.93006 0.89717 1.51430 0.92034 1.17811 0.91024 0.89457 0.95286 0.93035 1.22303 1.00025 0.86481 0.97605 1.60848 1.09489 1.08776 1.53062 1.20632 0.90484 0.96984 0.94603 1.19526 0.95916 0.94042 0.98732 1.21093 0.96108 0.99021 1.00400 1.18198 0.91734 0.88528 0.98900 1.84822 1.38488 1.45020 1.62934 1.21321 1.00908 0.93635 1.01250 1.21216 0.93453 0.97768 0.98996 1.20426 0.95413 0.94871 0.92257 0.92757 0.87867 0.96785 0.85436 0.90979 0.95065 0.86635 0.76782 0.86485 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.36 11.43 55.43 0.63 -23.73 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -13.59 7.78 -34.44 -0.27 -13.86 16 8 H 0.06 1.61 6.77 -52.49 -0.36 1.25 16 9 C 0.08 2.06 2.39 -92.96 -0.22 1.84 16 10 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16 11 C 0.06 1.49 5.48 -3.73 -0.02 1.47 16 12 N -0.69 -13.71 6.88 -115.16 -0.79 -14.50 16 13 C 0.10 1.84 6.33 -5.15 -0.03 1.81 16 14 C -0.08 -1.63 5.79 -104.63 -0.61 -2.24 16 15 C -0.15 -2.61 9.59 -39.33 -0.38 -2.99 16 16 C 0.07 1.22 6.70 -39.29 -0.26 0.96 16 17 O -0.50 -7.48 13.51 -19.40 -0.26 -7.75 16 18 C -0.15 -2.76 9.99 -39.50 -0.39 -3.15 16 19 C -0.10 -1.98 8.73 -39.51 -0.34 -2.33 16 20 C -0.03 -0.65 5.44 -104.55 -0.57 -1.22 16 21 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 22 H 0.10 2.62 6.39 -51.93 -0.33 2.29 16 23 H 0.01 0.33 8.02 -51.93 -0.42 -0.08 16 24 H 0.33 5.59 8.90 -39.29 -0.35 5.24 16 25 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.38 3.70 9.06 45.56 0.41 4.11 16 29 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 30 H 0.13 2.73 7.15 -52.48 -0.38 2.35 16 LS Contribution 251.32 15.07 3.79 3.79 Total: -1.00 -28.95 251.32 -7.51 -36.46 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -2.66 Total: 8.25 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -3.19 Total: -18.11 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.16 Total: -38.23 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.26 Total: -7.75 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.95 -7.51 -36.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310568.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.603 kcal (2) G-P(sol) polarization free energy of solvation -28.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds