Wall clock time and date at job start Mon Mar 30 2020 20:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.35904 * 116.99628 * 179.97438 * 10 9 7 12 12 C 1.38781 * 119.98046 * 359.72615 * 11 10 9 13 13 C 1.38171 * 119.76485 * 179.86825 * 12 11 10 14 14 C 1.37896 * 120.29247 * 0.34329 * 13 12 11 15 15 C 1.39692 * 120.39946 * 359.87234 * 14 13 12 16 16 C 1.38539 * 119.05731 * 359.97318 * 15 14 13 17 17 C 1.51211 * 108.56052 * 179.97438 * 16 15 14 18 18 C 1.53751 * 104.52664 * 359.97438 * 17 16 15 19 19 N 1.39581 * 129.29358 * 179.97438 * 15 14 13 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.08000 * 120.11863 * 359.97438 * 12 11 10 24 24 H 1.08002 * 119.85562 * 180.21647 * 13 12 11 25 25 H 1.07999 * 119.80537 * 179.84399 * 14 13 12 26 26 H 1.08995 * 110.42523 * 118.76156 * 17 16 15 27 27 H 1.09001 * 110.42277 * 241.11856 * 17 16 15 28 28 H 1.09000 * 110.30330 * 118.92889 * 18 17 16 29 29 H 1.09002 * 110.30485 * 241.07643 * 18 17 16 30 30 H 0.96998 * 124.95441 * 0.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.6600 -4.8412 0.0011 12 6 0.2841 -5.0224 0.0073 13 6 -0.2393 -6.3012 0.0051 14 6 0.5992 -7.3960 0.0038 15 6 1.9856 -7.2245 0.0021 16 6 2.5047 -5.9401 0.0011 17 6 4.0141 -6.0311 -0.0001 18 6 4.3095 -7.5399 0.0010 19 7 2.9954 -8.1881 0.0011 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 -0.3752 -4.1671 0.0122 24 1 -1.3098 -6.4439 0.0064 25 1 0.1816 -8.3919 0.0046 26 1 4.4226 -5.5638 -0.8960 27 1 4.4242 -5.5611 0.8938 28 1 4.8667 -7.8169 -0.8939 29 1 4.8682 -7.8153 0.8956 30 1 2.8486 -9.1470 0.0012 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260368615.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:35 Heat of formation + Delta-G solvation = -33.643847 kcal Electronic energy + Delta-G solvation = -14165.262391 eV Core-core repulsion = 11731.480192 eV Total energy + Delta-G solvation = -2433.782199 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.40950 -39.34311 -36.58700 -35.05555 -32.40395 -30.30999 -29.81636 -28.79966 -25.31302 -23.58247 -22.34460 -22.17519 -19.24980 -18.47143 -17.50159 -16.73125 -16.58032 -16.40856 -16.02291 -15.78323 -15.42005 -14.34449 -13.75181 -13.53276 -13.52968 -13.04948 -12.99257 -12.91146 -12.80239 -12.49412 -12.10211 -12.00252 -11.93856 -11.33171 -10.88759 -10.69170 -8.99784 -8.38596 -8.25557 -6.53449 0.55883 0.69691 1.38953 1.44283 1.52748 2.27276 2.48824 2.84844 2.91479 2.96111 3.82666 3.87370 4.21827 4.29549 4.38432 4.52714 4.59693 4.65768 4.78412 4.82257 4.98645 5.10613 5.19051 5.41521 5.45825 5.57826 5.60151 5.70493 5.86348 6.19917 6.52935 6.84259 7.06845 7.18866 8.73725 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.045894 B = 0.006708 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.957595 B = 4172.893123 C = 4756.984676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.989 3.011 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.264 1.264 7 C -0.559 4.559 8 H 0.067 0.933 9 C 0.215 3.785 10 O -0.336 6.336 11 C 0.160 3.840 12 C -0.286 4.286 13 C -0.036 4.036 14 C -0.222 4.222 15 C 0.227 3.773 16 C -0.245 4.245 17 C -0.077 4.077 18 C 0.126 3.874 19 N -0.733 5.733 20 H 0.274 0.726 21 H -0.001 1.001 22 H -0.002 1.002 23 H 0.107 0.893 24 H 0.150 0.850 25 H 0.150 0.850 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.994 -15.482 0.009 16.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.811 3.189 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.085 0.915 9 C 0.141 3.859 10 O -0.250 6.250 11 C 0.113 3.887 12 C -0.307 4.307 13 C -0.054 4.054 14 C -0.245 4.245 15 C 0.122 3.878 16 C -0.251 4.251 17 C -0.114 4.114 18 C 0.002 3.998 19 N -0.367 5.367 20 H 0.083 0.917 21 H 0.016 0.984 22 H 0.016 0.984 23 H 0.125 0.875 24 H 0.168 0.832 25 H 0.168 0.832 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.222 -15.342 0.008 16.206 hybrid contribution -0.403 0.863 -0.002 0.953 sum 4.819 -14.479 0.007 15.260 Atomic orbital electron populations 1.70061 1.07830 1.29114 1.49461 1.25995 0.96030 1.03429 0.93391 0.85146 0.78067 0.76163 0.79514 1.18844 1.19695 1.18832 1.21303 0.94348 0.90193 1.53763 0.91527 1.20130 0.88400 0.82674 0.94680 1.86010 1.38759 1.12973 1.87212 1.18934 0.92247 0.84356 0.93202 1.21142 0.93478 0.99463 1.16578 1.20824 1.00600 0.90205 0.93804 1.20458 0.89750 0.99958 1.14329 1.18172 0.90317 0.87983 0.91342 1.19283 0.96688 0.90845 1.18304 1.20905 0.90546 0.97324 1.02646 1.21877 0.84906 0.89857 1.03129 1.44669 1.03197 1.06687 1.82184 0.91700 0.98351 0.98377 0.87520 0.83218 0.83246 0.90850 0.90840 0.89428 0.89417 0.73321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 2 C 0.01 0.64 5.46 84.66 0.46 1.10 16 3 Si 0.99 44.31 29.54 68.60 2.03 46.33 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.56 -33.89 9.43 25.60 0.24 -33.65 16 8 H 0.07 3.96 7.81 -2.91 -0.02 3.93 16 9 C 0.21 12.62 4.49 71.24 0.32 12.94 16 10 O -0.34 -18.12 10.08 -92.47 -0.93 -19.06 16 11 C 0.16 7.36 6.68 22.49 0.15 7.51 16 12 C -0.29 -12.23 9.04 22.38 0.20 -12.03 16 13 C -0.04 -1.17 10.01 22.17 0.22 -0.95 16 14 C -0.22 -6.36 10.07 22.54 0.23 -6.13 16 15 C 0.23 6.95 7.03 38.33 0.27 7.22 16 16 C -0.25 -9.31 6.19 -19.54 -0.12 -9.43 16 17 C -0.08 -2.33 6.89 30.26 0.21 -2.12 16 18 C 0.13 2.56 7.96 86.63 0.69 3.25 16 19 N -0.73 -15.94 6.53 -337.82 -2.21 -18.15 16 20 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 21 H 0.00 -0.08 7.65 -2.39 -0.02 -0.10 16 22 H 0.00 -0.10 7.67 -2.39 -0.02 -0.11 16 23 H 0.11 4.98 6.30 -2.91 -0.02 4.96 16 24 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 25 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 26 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.43 6.32 8.96 -92.71 -0.83 5.49 16 Total: -1.00 -70.47 259.41 2.36 -68.11 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.32 Total: 10.68 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 2.87 Total: -32.30 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -1.92 Total: -73.77 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.93 Total: -19.06 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -70.47 2.36 -68.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260368615.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.466 kcal (2) G-P(sol) polarization free energy of solvation -70.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds