Wall clock time and date at job start Mon Mar 30 2020 20:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86797 * 120.00304 * 2 1 4 4 H 1.48497 * 109.47381 * 240.00089 * 3 2 1 5 5 H 1.48502 * 109.46747 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47083 * 119.99690 * 3 2 1 7 7 C 1.38659 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99884 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00132 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00384 * 185.05651 * 9 7 2 11 11 C 1.38910 * 120.13516 * 354.45580 * 10 9 7 12 12 C 1.37887 * 119.75486 * 180.10386 * 11 10 9 13 13 C 1.38765 * 120.44740 * 0.03689 * 12 11 10 14 14 C 1.37930 * 119.95677 * 359.78362 * 13 12 11 15 15 C 1.38600 * 119.78822 * 0.27063 * 14 13 12 16 16 C 1.50635 * 121.84165 * 180.29448 * 14 13 12 17 17 N 1.46626 * 110.49840 * 342.43497 * 16 14 13 18 18 C 1.47159 * 110.25038 * 52.54387 * 17 16 14 19 19 C 1.50742 * 118.41611 * 179.57421 * 13 12 11 20 20 H 0.96999 * 120.00073 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.12372 * 0.07650 * 11 10 9 22 22 H 1.07995 * 119.77646 * 180.02562 * 12 11 10 23 23 H 1.08004 * 119.83477 * 179.87249 * 15 14 13 24 24 H 1.08999 * 109.26468 * 222.17274 * 16 14 13 25 25 H 1.08992 * 109.26963 * 102.69656 * 16 14 13 26 26 H 1.00901 * 110.99907 * 175.96704 * 17 16 14 27 27 H 1.08992 * 109.63167 * 48.41918 * 18 17 16 28 28 H 1.09002 * 109.62647 * 169.00621 * 18 17 16 29 29 H 1.09003 * 109.38738 * 283.38648 * 19 13 12 30 30 H 1.09000 * 109.39126 * 43.18970 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3346 -2.3684 0.0005 10 6 2.0697 -3.5046 0.1077 11 6 3.4573 -3.4412 0.0952 12 6 4.1963 -4.6004 0.2024 13 6 3.5632 -5.8294 0.3218 14 6 2.1856 -5.8958 0.3383 15 6 1.4389 -4.7333 0.2296 16 6 1.4547 -7.2061 0.4726 17 7 2.3474 -8.3265 0.1601 18 6 3.5803 -8.2333 0.9581 19 6 4.4156 -7.0683 0.4262 20 1 -0.4850 0.8400 0.0004 21 1 3.9556 -2.4876 0.0015 22 1 5.2751 -4.5515 0.1931 23 1 0.3601 -4.7846 0.2404 24 1 0.6085 -7.2179 -0.2143 25 1 1.0896 -7.3112 1.4942 26 1 1.8849 -9.2104 0.3110 27 1 3.3274 -8.0558 2.0033 28 1 4.1460 -9.1607 0.8676 29 1 4.8059 -7.3231 -0.5592 30 1 5.2460 -6.8800 1.1067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260472072.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:45 Heat of formation + Delta-G solvation = -28.234545 kcal Electronic energy + Delta-G solvation = -14235.046135 eV Core-core repulsion = 11801.498500 eV Total energy + Delta-G solvation = -2433.547634 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.09569 -39.36523 -36.62647 -34.31299 -33.32921 -31.34242 -29.68168 -27.22811 -25.37142 -23.77832 -23.09299 -21.03232 -19.22992 -18.69239 -17.44565 -16.41903 -16.35810 -16.03370 -15.64806 -15.35636 -15.14012 -14.58727 -14.31990 -13.90982 -13.59269 -13.41759 -13.16631 -12.80986 -12.75145 -12.17802 -12.00725 -11.90113 -11.53228 -11.17504 -10.75210 -9.79801 -9.31560 -8.84611 -8.47404 -6.15981 0.50742 0.69337 1.34248 1.45294 1.50954 2.17528 2.77764 3.12126 3.25511 3.52198 3.87634 4.00328 4.13684 4.33675 4.42663 4.50381 4.54889 4.59744 4.65598 4.86890 4.97159 5.07678 5.14313 5.24192 5.28175 5.57922 5.70441 5.78013 5.98874 6.01575 6.20021 6.59164 6.96869 7.77884 8.75850 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.062939 B = 0.006574 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.768548 B = 4258.480920 C = 4658.260669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.020 2.980 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.416 4.416 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.112 3.888 11 C -0.241 4.241 12 C -0.074 4.074 13 C -0.153 4.153 14 C -0.042 4.042 15 C -0.206 4.206 16 C 0.103 3.897 17 N -0.689 5.689 18 C 0.055 3.945 19 C -0.062 4.062 20 H 0.273 0.727 21 H 0.120 0.880 22 H 0.144 0.856 23 H 0.111 0.889 24 H 0.089 0.911 25 H 0.053 0.947 26 H 0.360 0.640 27 H 0.034 0.966 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.470 -13.414 2.280 16.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.062 3.938 11 C -0.260 4.260 12 C -0.092 4.092 13 C -0.154 4.154 14 C -0.042 4.042 15 C -0.226 4.226 16 C -0.026 4.026 17 N -0.321 5.321 18 C -0.074 4.074 19 C -0.099 4.099 20 H 0.082 0.918 21 H 0.138 0.862 22 H 0.162 0.838 23 H 0.129 0.871 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.179 0.821 27 H 0.052 0.948 28 H 0.124 0.876 29 H 0.096 0.904 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.327 -12.962 1.702 15.500 hybrid contribution -0.489 1.002 0.757 1.347 sum 7.838 -11.960 2.459 14.510 Atomic orbital electron populations 1.70180 1.08054 1.28879 1.48903 1.26613 0.96877 1.02750 0.95806 0.84633 0.77383 0.74161 0.79926 1.18139 1.19505 1.18164 1.21790 0.92511 0.81484 1.53457 0.88212 1.83933 1.35867 1.12514 1.81713 1.19765 0.91623 0.87865 0.94579 1.21267 0.93154 1.00086 1.11482 1.21109 1.00098 0.90933 0.97034 1.19665 0.93038 0.95687 1.06989 1.19482 0.93505 0.93679 0.97541 1.20247 0.99599 0.90285 1.12432 1.20673 0.94614 0.87253 1.00044 1.60532 1.07227 1.05151 1.59207 1.22060 0.91458 0.99472 0.94426 1.20441 0.96655 0.90545 1.02256 0.91816 0.86176 0.83832 0.87068 0.89298 0.92938 0.82067 0.94794 0.87639 0.90374 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.62 13.67 21.61 0.30 -57.33 16 2 C -0.02 -1.35 5.49 84.84 0.47 -0.88 16 3 Si 1.02 43.52 29.55 68.60 2.03 45.55 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.42 -24.92 9.49 67.92 0.64 -24.28 16 8 H 0.10 5.48 5.21 -2.91 -0.02 5.46 16 9 O -0.23 -14.55 9.76 -22.67 -0.22 -14.77 16 10 C 0.11 5.84 6.64 22.53 0.15 5.99 16 11 C -0.24 -11.01 9.17 22.35 0.20 -10.80 16 12 C -0.07 -2.70 9.65 22.31 0.22 -2.48 16 13 C -0.15 -5.19 5.78 -19.80 -0.11 -5.31 16 14 C -0.04 -1.53 5.79 -19.87 -0.12 -1.64 16 15 C -0.21 -9.35 9.59 22.46 0.22 -9.13 16 16 C 0.10 2.86 6.33 85.59 0.54 3.40 16 17 N -0.69 -15.32 6.88 -518.28 -3.56 -18.88 16 18 C 0.05 1.09 6.58 86.22 0.57 1.66 16 19 C -0.06 -1.47 5.94 29.83 0.18 -1.30 16 20 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 21 H 0.12 5.51 5.66 -2.91 -0.02 5.50 16 22 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 23 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 24 H 0.09 2.39 8.13 -2.39 -0.02 2.37 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.36 5.75 8.90 -89.69 -0.80 4.95 16 27 H 0.03 0.69 8.05 -2.39 -0.02 0.67 16 28 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -72.45 254.57 1.85 -70.60 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.36 Total: 19.60 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 2.95 Total: -44.77 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -3.27 Total: -76.21 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.22 Total: -14.77 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -72.45 1.85 -70.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472072.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.366 kcal (2) G-P(sol) polarization free energy of solvation -72.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds