Wall clock time and date at job start Mon Mar 30 2020 20:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86797 * 120.00141 * 2 1 4 4 H 1.48498 * 109.47107 * 240.00218 * 3 2 1 5 5 H 1.48502 * 109.47141 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47046 * 120.00414 * 3 2 1 7 7 C 1.38651 * 119.99441 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99935 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00370 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00142 * 185.05946 * 9 7 2 11 11 C 1.38902 * 120.15905 * 354.47938 * 10 9 7 12 12 C 1.37866 * 119.79551 * 180.02562 * 11 10 9 13 13 C 1.38816 * 120.47406 * 0.26053 * 12 11 10 14 14 C 1.37921 * 119.83404 * 359.26566 * 13 12 11 15 15 C 1.38552 * 119.91221 * 0.84295 * 14 13 12 16 16 C 1.50734 * 121.65461 * 180.83886 * 14 13 12 17 17 C 1.53216 * 109.85288 * 342.51373 * 16 14 13 18 18 N 1.47153 * 108.22781 * 50.88984 * 17 16 14 19 19 C 1.46623 * 110.25588 * 288.43458 * 18 17 16 20 20 H 0.97005 * 119.99358 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.10048 * 0.05954 * 11 10 9 22 22 H 1.07998 * 119.76563 * 179.97438 * 12 11 10 23 23 H 1.08002 * 119.84767 * 179.52953 * 15 14 13 24 24 H 1.08996 * 109.38555 * 103.34489 * 16 14 13 25 25 H 1.08998 * 109.38295 * 223.03506 * 16 14 13 26 26 H 1.09005 * 110.04586 * 291.11542 * 17 16 14 27 27 H 1.09000 * 109.67110 * 170.44491 * 17 16 14 28 28 H 1.00902 * 111.00106 * 51.84932 * 18 17 16 29 29 H 1.09002 * 109.29894 * 292.33414 * 19 18 17 30 30 H 1.08993 * 109.30552 * 172.95942 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 3.4574 -3.4417 0.0927 12 6 4.1968 -4.6004 0.2004 13 6 3.5645 -5.8308 0.3164 14 6 2.1870 -5.8948 0.3393 15 6 1.4393 -4.7335 0.2290 16 6 1.4583 -7.2066 0.4825 17 6 2.4049 -8.3660 0.1548 18 7 3.6364 -8.1910 0.9409 19 6 4.4187 -7.0677 0.4155 20 1 -0.4849 0.8401 0.0004 21 1 3.9555 -2.4881 -0.0009 22 1 5.2756 -4.5510 0.1899 23 1 0.3606 -4.7857 0.2394 24 1 1.0875 -7.3050 1.5027 25 1 0.6173 -7.2308 -0.2105 26 1 2.6456 -8.3628 -0.9083 27 1 1.9323 -9.3117 0.4204 28 1 3.4256 -8.0585 1.9187 29 1 4.7975 -7.3241 -0.5739 30 1 5.2600 -6.8722 1.0803 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260488939.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:47 Heat of formation + Delta-G solvation = -30.862500 kcal Electronic energy + Delta-G solvation = -14256.953952 eV Core-core repulsion = 11823.292361 eV Total energy + Delta-G solvation = -2433.661591 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.18980 -39.48379 -36.60701 -34.30177 -33.47362 -30.73243 -29.98569 -27.29852 -24.94873 -24.06091 -23.10516 -21.35132 -19.51589 -18.70415 -16.80776 -16.73245 -16.40728 -15.97487 -15.66874 -15.36526 -15.18970 -14.53520 -14.22263 -13.93286 -13.68492 -13.28998 -12.96280 -12.79442 -12.72245 -12.34772 -12.19716 -12.01160 -11.76886 -11.19013 -10.78369 -9.66424 -9.43941 -8.90332 -8.50449 -6.19476 0.48424 0.62646 1.32706 1.43603 1.49529 2.15356 2.74043 3.08658 3.34772 3.50065 3.90604 4.01320 4.07167 4.21601 4.30113 4.48296 4.54714 4.68651 4.70643 4.93461 4.97978 5.00081 5.13480 5.16673 5.23992 5.52394 5.66572 5.71305 5.98331 6.03402 6.18125 6.48270 6.93719 7.73993 8.72694 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.062919 B = 0.006586 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.909727 B = 4250.731028 C = 4644.949798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.021 2.979 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.417 4.417 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.114 3.886 11 C -0.244 4.244 12 C -0.064 4.064 13 C -0.197 4.197 14 C -0.038 4.038 15 C -0.211 4.211 16 C -0.113 4.113 17 C 0.062 3.938 18 N -0.678 5.678 19 C 0.114 3.886 20 H 0.273 0.727 21 H 0.120 0.880 22 H 0.147 0.853 23 H 0.107 0.893 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.346 0.654 29 H 0.084 0.916 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.064 -12.311 1.359 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.263 4.263 12 C -0.083 4.083 13 C -0.199 4.199 14 C -0.038 4.038 15 C -0.231 4.231 16 C -0.152 4.152 17 C -0.067 4.067 18 N -0.305 5.305 19 C -0.016 4.016 20 H 0.082 0.918 21 H 0.138 0.862 22 H 0.164 0.836 23 H 0.125 0.875 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.122 0.878 28 H 0.164 0.836 29 H 0.102 0.898 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.022 -12.661 0.991 15.021 hybrid contribution -0.768 2.146 0.179 2.286 sum 7.254 -10.515 1.170 12.828 Atomic orbital electron populations 1.70189 1.08087 1.28944 1.48754 1.26636 0.96885 1.02811 0.95712 0.84625 0.77389 0.74078 0.79968 1.18078 1.19480 1.18128 1.21800 0.92537 0.81446 1.53561 0.88144 1.83937 1.35972 1.12593 1.81513 1.19855 0.91737 0.87879 0.94190 1.21268 0.93080 1.00226 1.11762 1.21095 1.00202 0.90796 0.96159 1.20481 0.93622 0.97016 1.08763 1.19537 0.93265 0.94218 0.96807 1.20353 0.99457 0.90513 1.12765 1.21307 0.99228 0.91491 1.03163 1.22167 0.88805 0.96942 0.98804 1.61076 1.20604 1.41231 1.07620 1.20793 0.94651 0.84415 1.01747 0.91767 0.86219 0.83567 0.87530 0.89579 0.90129 0.90910 0.87821 0.83609 0.89758 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.39 13.67 21.61 0.30 -57.09 16 2 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 3 Si 1.02 43.21 29.55 68.60 2.03 45.24 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 7 C -0.42 -24.83 9.49 67.92 0.64 -24.19 16 8 H 0.10 5.47 5.21 -2.91 -0.02 5.45 16 9 O -0.23 -14.47 9.76 -22.74 -0.22 -14.70 16 10 C 0.11 5.87 6.64 22.53 0.15 6.02 16 11 C -0.24 -10.93 9.17 22.34 0.20 -10.72 16 12 C -0.06 -2.24 9.64 22.32 0.22 -2.03 16 13 C -0.20 -6.28 5.80 -19.82 -0.11 -6.39 16 14 C -0.04 -1.33 5.77 -19.85 -0.11 -1.44 16 15 C -0.21 -9.47 9.60 22.45 0.22 -9.25 16 16 C -0.11 -2.89 5.82 29.93 0.17 -2.71 16 17 C 0.06 1.26 6.64 86.33 0.57 1.83 16 18 N -0.68 -14.16 6.96 -517.68 -3.60 -17.76 16 19 C 0.11 2.63 6.34 85.59 0.54 3.18 16 20 H 0.27 15.57 8.31 -92.70 -0.77 14.79 16 21 H 0.12 5.40 5.66 -2.91 -0.02 5.39 16 22 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 23 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 24 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.07 1.53 8.05 -2.38 -0.02 1.51 16 27 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.35 6.75 8.73 -89.69 -0.78 5.97 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.87 8.13 -2.39 -0.02 1.86 16 Total: -1.00 -70.84 254.42 1.83 -69.01 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.37 Total: 21.86 kcal Atomic # 6 Polarization: -49.52 SS G_CDS: 2.96 Total: -46.56 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -3.31 Total: -74.85 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.22 Total: -14.70 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -70.84 1.83 -69.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260488939.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.151 kcal (2) G-P(sol) polarization free energy of solvation -70.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds