Wall clock time and date at job start Mon Mar 30 2020 20:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99794 * 2 1 4 4 H 1.48498 * 109.46850 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47165 * 300.00228 * 3 2 1 6 6 H 1.48504 * 109.46793 * 60.00347 * 3 2 1 7 7 C 1.37876 * 120.00451 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.46790 * 180.02562 * 9 7 2 11 11 C 1.38240 * 120.46025 * 264.99360 * 10 9 7 12 12 N 1.31862 * 120.67158 * 179.97438 * 11 10 9 13 13 C 1.31832 * 121.77490 * 0.10217 * 12 11 10 14 14 C 1.38437 * 120.77107 * 359.96302 * 13 12 11 15 15 C 1.38141 * 119.02718 * 359.86676 * 14 13 12 16 16 C 1.50443 * 121.58536 * 180.50003 * 15 14 13 17 17 C 1.53066 * 109.64200 * 343.15076 * 16 15 14 18 18 O 1.42916 * 108.51861 * 48.88968 * 17 16 15 19 19 C 1.42804 * 113.44690 * 289.34495 * 18 17 16 20 20 H 0.96996 * 119.99724 * 359.97438 * 1 2 3 21 21 H 1.08992 * 109.47319 * 59.99613 * 9 7 2 22 22 H 1.09001 * 109.46706 * 299.99527 * 9 7 2 23 23 H 1.07998 * 119.66527 * 0.02562 * 11 10 9 24 24 H 1.08001 * 119.61222 * 179.97438 * 13 12 11 25 25 H 1.08998 * 109.44549 * 103.20321 * 16 15 14 26 26 H 1.08995 * 109.44609 * 223.13575 * 16 15 14 27 27 H 1.09002 * 109.61612 * 168.64483 * 17 16 15 28 28 H 1.08996 * 109.62376 * 289.00818 * 17 16 15 29 29 H 1.09002 * 109.36198 * 291.69731 * 19 18 17 30 30 H 1.08998 * 109.35803 * 171.96921 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2305 -3.6445 -0.0015 11 6 2.6078 -4.2442 -1.1885 12 7 3.4649 -5.2463 -1.1932 13 6 3.9909 -5.7151 -0.0789 14 6 3.6587 -5.1651 1.1473 15 6 2.7664 -4.1113 1.1897 16 6 2.3736 -3.4632 2.4893 17 6 2.7471 -4.3814 3.6556 18 8 4.1001 -4.8077 3.4824 19 6 4.2729 -5.7251 2.4018 20 1 -0.4849 0.8400 0.0004 21 1 0.6248 -2.5563 -0.8919 22 1 0.6242 -2.5575 0.8881 23 1 2.1972 -3.8877 -2.1216 24 1 4.6893 -6.5377 -0.1233 25 1 2.8970 -2.5129 2.5936 26 1 1.2979 -3.2876 2.4966 27 1 2.6513 -3.8370 4.5951 28 1 2.0859 -5.2478 3.6657 29 1 3.7902 -6.6705 2.6496 30 1 5.3371 -5.8947 2.2385 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260555683.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:55 Heat of formation + Delta-G solvation = -27.816891 kcal Electronic energy + Delta-G solvation = -14583.400084 eV Core-core repulsion = 12149.870560 eV Total energy + Delta-G solvation = -2433.529524 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.31677 -37.81297 -34.34575 -32.63941 -31.79075 -30.32790 -27.27928 -25.54352 -24.04488 -23.49884 -20.46945 -20.08893 -16.70485 -16.46199 -16.39448 -15.80485 -15.02535 -14.70976 -14.39176 -13.63113 -13.14390 -12.95168 -12.52382 -12.24847 -12.09200 -11.93475 -11.28169 -11.22733 -10.90103 -10.65094 -10.57593 -10.10424 -9.60936 -9.42299 -8.76501 -8.65675 -8.48568 -8.04776 -6.13646 -4.17838 1.65594 1.91133 3.24209 3.32567 3.37799 4.00552 4.29243 4.43939 4.89876 5.05921 5.08701 5.20755 5.24073 5.38213 5.44155 5.48089 5.69449 5.84646 6.00693 6.06460 6.19230 6.45514 6.56072 6.63393 6.91811 7.23287 7.32108 7.45104 7.58127 7.81766 8.19306 8.53998 8.86918 9.46865 10.96082 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.030426 B = 0.009314 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.052206 B = 3005.643683 C = 3478.443808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.053 3.947 10 C -0.080 4.080 11 C 0.086 3.914 12 N -0.490 5.490 13 C 0.074 3.926 14 C -0.182 4.182 15 C -0.036 4.036 16 C -0.111 4.111 17 C 0.059 3.941 18 O -0.379 6.379 19 C 0.113 3.887 20 H 0.263 0.737 21 H 0.031 0.969 22 H 0.035 0.965 23 H 0.152 0.848 24 H 0.145 0.855 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.608 -9.170 5.066 11.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.082 4.082 11 C -0.070 4.070 12 N -0.198 5.198 13 C -0.084 4.084 14 C -0.185 4.185 15 C -0.044 4.044 16 C -0.147 4.147 17 C -0.017 4.017 18 O -0.298 6.298 19 C 0.035 3.965 20 H 0.072 0.928 21 H 0.049 0.951 22 H 0.053 0.947 23 H 0.169 0.831 24 H 0.162 0.838 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.838 -9.362 4.378 11.411 hybrid contribution -0.037 1.317 0.451 1.393 sum 4.801 -8.045 4.829 10.540 Atomic orbital electron populations 1.69954 1.05995 1.26871 1.50221 1.24982 0.94872 0.99229 0.94997 0.86492 0.80191 0.83433 0.77729 1.19663 1.20842 1.20856 1.20997 0.92960 0.89593 1.51391 0.92565 1.18317 0.92281 0.89144 0.98712 1.21590 0.97710 0.96725 0.92196 1.22668 0.94263 0.91927 0.98124 1.67529 1.09399 1.12211 1.30667 1.22247 0.99338 0.99484 0.87317 1.21037 1.00734 0.99405 0.97289 1.19580 0.94859 0.94034 0.95942 1.21055 1.03348 0.99593 0.90749 1.22671 0.83000 0.97334 0.98724 1.87953 1.27714 1.63712 1.50388 1.21230 1.00683 0.91170 0.83390 0.92776 0.95052 0.94740 0.83072 0.83803 0.88578 0.88788 0.88462 0.93144 0.92208 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -13.79 9.09 -34.44 -0.31 -14.10 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.05 1.29 4.63 -29.03 -0.13 1.16 16 10 C -0.08 -1.73 5.09 -104.45 -0.53 -2.26 16 11 C 0.09 1.75 10.85 -17.54 -0.19 1.56 16 12 N -0.49 -9.45 10.36 -13.20 -0.14 -9.59 16 13 C 0.07 1.25 10.86 -17.48 -0.19 1.06 16 14 C -0.18 -3.10 5.80 -104.69 -0.61 -3.71 16 15 C -0.04 -0.71 5.78 -104.61 -0.60 -1.31 16 16 C -0.11 -1.96 5.39 -27.97 -0.15 -2.11 16 17 C 0.06 0.85 6.84 37.19 0.25 1.10 16 18 O -0.38 -5.89 10.77 -35.23 -0.38 -6.27 16 19 C 0.11 1.55 6.72 35.90 0.24 1.79 16 20 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 21 H 0.03 0.81 8.06 -51.93 -0.42 0.39 16 22 H 0.03 0.87 6.44 -51.93 -0.33 0.54 16 23 H 0.15 2.92 8.06 -52.49 -0.42 2.49 16 24 H 0.14 1.89 8.06 -52.49 -0.42 1.46 16 25 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 26 H 0.09 1.69 6.64 -51.93 -0.34 1.34 16 27 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 255.75 15.07 3.85 3.85 Total: -1.00 -29.80 255.75 -6.87 -36.67 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -3.60 Total: -0.87 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.32 Total: -15.26 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.60 Total: -34.24 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.38 Total: -6.27 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.80 -6.87 -36.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555683.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.851 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds