Wall clock time and date at job start Mon Mar 30 2020 20:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99794 * 2 1 4 4 H 1.48498 * 109.46850 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47165 * 300.00228 * 3 2 1 6 6 H 1.48504 * 109.46793 * 60.00347 * 3 2 1 7 7 C 1.37876 * 120.00451 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.46790 * 180.02562 * 9 7 2 11 11 C 1.38240 * 120.46025 * 264.99360 * 10 9 7 12 12 N 1.31862 * 120.67158 * 179.97438 * 11 10 9 13 13 C 1.31832 * 121.77490 * 0.10217 * 12 11 10 14 14 C 1.38437 * 120.77107 * 359.96302 * 13 12 11 15 15 C 1.38141 * 119.02718 * 359.86676 * 14 13 12 16 16 C 1.50443 * 121.58536 * 180.50003 * 15 14 13 17 17 C 1.53066 * 109.64200 * 343.15076 * 16 15 14 18 18 O 1.42916 * 108.51861 * 48.88968 * 17 16 15 19 19 C 1.42804 * 113.44690 * 289.34495 * 18 17 16 20 20 H 0.96996 * 119.99724 * 359.97438 * 1 2 3 21 21 H 1.08992 * 109.47319 * 59.99613 * 9 7 2 22 22 H 1.09001 * 109.46706 * 299.99527 * 9 7 2 23 23 H 1.07998 * 119.66527 * 0.02562 * 11 10 9 24 24 H 1.08001 * 119.61222 * 179.97438 * 13 12 11 25 25 H 1.08998 * 109.44549 * 103.20321 * 16 15 14 26 26 H 1.08995 * 109.44609 * 223.13575 * 16 15 14 27 27 H 1.09002 * 109.61612 * 168.64483 * 17 16 15 28 28 H 1.08996 * 109.62376 * 289.00818 * 17 16 15 29 29 H 1.09002 * 109.36198 * 291.69731 * 19 18 17 30 30 H 1.08998 * 109.35803 * 171.96921 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2305 -3.6445 -0.0015 11 6 2.6078 -4.2442 -1.1885 12 7 3.4649 -5.2463 -1.1932 13 6 3.9909 -5.7151 -0.0789 14 6 3.6587 -5.1651 1.1473 15 6 2.7664 -4.1113 1.1897 16 6 2.3736 -3.4632 2.4893 17 6 2.7471 -4.3814 3.6556 18 8 4.1001 -4.8077 3.4824 19 6 4.2729 -5.7251 2.4018 20 1 -0.4849 0.8400 0.0004 21 1 0.6248 -2.5563 -0.8919 22 1 0.6242 -2.5575 0.8881 23 1 2.1972 -3.8877 -2.1216 24 1 4.6893 -6.5377 -0.1233 25 1 2.8970 -2.5129 2.5936 26 1 1.2979 -3.2876 2.4966 27 1 2.6513 -3.8370 4.5951 28 1 2.0859 -5.2478 3.6657 29 1 3.7902 -6.6705 2.6496 30 1 5.3371 -5.8947 2.2385 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260555683.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:54 Heat of formation + Delta-G solvation = -46.690668 kcal Electronic energy + Delta-G solvation = -14584.218512 eV Core-core repulsion = 12149.870560 eV Total energy + Delta-G solvation = -2434.347952 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.71858 -39.07209 -36.09662 -34.38229 -33.28387 -31.76895 -29.11474 -26.80600 -25.55381 -25.19993 -22.06072 -21.44960 -18.58322 -18.05726 -17.71288 -17.11587 -16.61336 -16.23068 -15.72524 -15.14685 -14.69112 -14.27713 -14.23422 -13.98390 -13.64305 -13.26824 -13.16275 -12.77133 -12.53726 -12.46426 -12.08881 -11.75481 -11.56246 -10.80122 -10.64216 -10.19058 -10.11172 -9.60412 -8.24385 -6.36139 0.19819 0.40033 1.36015 1.38022 1.50031 2.36413 2.84982 2.94653 3.07457 3.56429 3.73980 3.82896 3.89214 4.09593 4.27335 4.31293 4.46363 4.54082 4.72863 4.74556 4.79632 4.93589 5.07500 5.18586 5.30921 5.34111 5.68663 5.75528 5.85651 6.12394 6.14804 6.73917 7.06161 7.32202 8.85253 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.030426 B = 0.009314 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.052206 B = 3005.643683 C = 3478.443808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.045 0.955 9 C 0.066 3.934 10 C -0.110 4.110 11 C 0.072 3.928 12 N -0.501 5.501 13 C 0.082 3.918 14 C -0.177 4.177 15 C -0.052 4.052 16 C -0.110 4.110 17 C 0.067 3.933 18 O -0.391 6.391 19 C 0.110 3.890 20 H 0.266 0.734 21 H 0.006 0.994 22 H 0.019 0.981 23 H 0.149 0.851 24 H 0.191 0.809 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.434 -10.460 6.187 13.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.063 0.937 9 C 0.028 3.972 10 C -0.112 4.112 11 C -0.082 4.082 12 N -0.209 5.209 13 C -0.076 4.076 14 C -0.179 4.179 15 C -0.059 4.059 16 C -0.147 4.147 17 C -0.010 4.010 18 O -0.310 6.310 19 C 0.034 3.966 20 H 0.075 0.925 21 H 0.025 0.975 22 H 0.037 0.963 23 H 0.166 0.834 24 H 0.208 0.792 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.136 0.864 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.661 -10.654 5.495 13.714 hybrid contribution -0.567 1.616 0.106 1.716 sum 6.093 -9.038 5.601 12.255 Atomic orbital electron populations 1.70054 1.07357 1.27905 1.51028 1.25780 0.95691 1.02603 0.94572 0.85494 0.78777 0.79299 0.78099 1.19534 1.20194 1.19899 1.21194 0.92523 0.91057 1.51202 0.93670 1.18004 0.92461 0.90102 0.96613 1.21343 0.98836 0.97020 0.93965 1.22614 0.95148 0.92773 0.97711 1.67593 1.09413 1.11868 1.32051 1.23038 0.98547 0.99579 0.86420 1.21487 0.99204 0.97924 0.99275 1.19860 0.95428 0.95048 0.95608 1.21036 1.02235 0.99487 0.91985 1.22702 0.83067 0.97463 0.97726 1.87949 1.28038 1.64233 1.50745 1.21561 1.02457 0.91554 0.81075 0.92462 0.97539 0.96339 0.83408 0.79173 0.90990 0.90107 0.86380 0.91182 0.89033 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.01 13.29 21.45 0.28 -53.73 16 2 C 0.01 0.70 5.46 84.65 0.46 1.16 16 3 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.52 -29.20 9.09 25.60 0.23 -28.97 16 8 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 9 C 0.07 3.41 4.63 29.10 0.13 3.54 16 10 C -0.11 -4.88 5.09 -19.75 -0.10 -4.98 16 11 C 0.07 3.01 10.85 84.69 0.92 3.93 16 12 N -0.50 -18.68 10.36 -195.66 -2.03 -20.70 16 13 C 0.08 2.51 10.86 84.74 0.92 3.43 16 14 C -0.18 -5.54 5.80 -19.91 -0.12 -5.65 16 15 C -0.05 -2.00 5.78 -19.86 -0.11 -2.11 16 16 C -0.11 -3.93 5.39 29.79 0.16 -3.77 16 17 C 0.07 1.76 6.84 72.00 0.49 2.25 16 18 O -0.39 -10.78 10.77 -148.98 -1.60 -12.39 16 19 C 0.11 2.52 6.72 71.17 0.48 3.00 16 20 H 0.27 14.61 8.31 -92.71 -0.77 13.83 16 21 H 0.01 0.35 8.06 -2.39 -0.02 0.33 16 22 H 0.02 1.00 6.44 -2.39 -0.02 0.98 16 23 H 0.15 6.01 8.06 -2.91 -0.02 5.99 16 24 H 0.19 3.95 8.06 -2.91 -0.02 3.92 16 25 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 26 H 0.08 3.03 6.64 -2.39 -0.02 3.02 16 27 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -65.40 255.75 3.28 -62.12 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.13 Total: 6.93 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 3.47 Total: -28.17 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.74 Total: -74.43 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -1.60 Total: -12.39 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -65.40 3.28 -62.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555683.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.430 kcal (2) G-P(sol) polarization free energy of solvation -65.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds