Wall clock time and date at job start Mon Mar 30 2020 20:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99691 * 2 1 4 4 H 1.48501 * 109.47103 * 270.00148 * 3 2 1 5 5 H 1.48497 * 109.47250 * 30.00781 * 3 2 1 6 6 H 1.48508 * 109.46902 * 150.00453 * 3 2 1 7 7 C 1.37878 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99726 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.46793 * 180.02562 * 9 7 2 11 11 C 1.35896 * 117.00340 * 180.02562 * 10 9 7 12 12 C 1.38766 * 120.03935 * 359.97438 * 11 10 9 13 13 C 1.38130 * 119.94003 * 179.97438 * 12 11 10 14 14 C 1.38284 * 120.06317 * 0.27616 * 13 12 11 15 15 C 1.38186 * 120.14973 * 359.44966 * 14 13 12 16 16 C 1.38401 * 119.99751 * 0.55158 * 15 14 13 17 17 C 1.51163 * 108.27395 * 179.72058 * 16 15 14 18 18 N 1.48060 * 105.67093 * 342.50703 * 17 16 15 19 19 C 1.48046 * 103.87676 * 27.59097 * 18 17 16 20 20 H 0.97000 * 120.00070 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47173 * 60.00649 * 9 7 2 22 22 H 1.08999 * 109.47380 * 300.00070 * 9 7 2 23 23 H 1.08004 * 120.03235 * 359.96235 * 12 11 10 24 24 H 1.08002 * 119.96529 * 179.97438 * 13 12 11 25 25 H 1.08000 * 119.92976 * 179.69817 * 14 13 12 26 26 H 1.09005 * 110.20864 * 101.55565 * 17 16 15 27 27 H 1.09003 * 110.21374 * 223.45229 * 17 16 15 28 28 H 1.00894 * 111.00201 * 146.95449 * 18 17 16 29 29 H 1.09000 * 110.21173 * 213.34583 * 19 18 17 30 30 H 1.09002 * 110.20297 * 91.45421 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.6603 -4.8411 -0.0011 12 6 0.2847 -5.0239 -0.0011 13 6 -0.2409 -6.3013 -0.0021 14 6 0.6022 -7.3974 0.0025 15 6 1.9725 -7.2190 -0.0032 16 6 2.5039 -5.9411 -0.0021 17 6 4.0113 -6.0546 -0.0022 18 7 4.3080 -7.4408 0.4251 19 6 3.1165 -8.2074 -0.0043 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 -0.3743 -4.1683 0.0000 24 1 -1.3115 -6.4441 -0.0017 25 1 0.1889 -8.3951 0.0066 26 1 4.4021 -5.8776 -1.0043 27 1 4.4426 -5.3430 0.7019 28 1 5.1422 -7.7871 -0.0246 29 1 2.9158 -9.0163 0.6982 30 1 3.2674 -8.6075 -1.0069 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260563852.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:56 Heat of formation + Delta-G solvation = -30.287371 kcal Electronic energy + Delta-G solvation = -14155.521114 eV Core-core repulsion = 11721.884463 eV Total energy + Delta-G solvation = -2433.636652 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.48877 -39.29446 -36.82244 -35.09558 -31.75234 -31.09679 -29.55625 -28.23319 -25.43233 -24.15502 -22.26501 -21.79216 -19.03547 -18.22683 -17.59228 -16.85849 -16.63450 -16.45578 -16.11934 -15.44314 -15.15528 -14.32661 -14.17485 -13.66158 -13.47182 -13.42579 -13.07790 -13.01507 -12.81251 -12.39415 -12.13599 -11.95975 -11.93923 -11.38357 -10.74370 -10.22416 -9.25764 -9.03102 -8.42284 -6.57031 0.26721 0.48815 1.37372 1.40443 1.52567 2.25172 2.70623 2.72842 2.92387 3.27651 3.47418 3.60652 4.08235 4.26045 4.36535 4.40000 4.52386 4.55201 4.66537 4.81516 4.85115 4.92615 5.08170 5.31441 5.40609 5.46336 5.48343 5.64630 5.80263 5.90341 6.38231 6.47176 6.75630 7.15232 8.70176 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.044964 B = 0.006730 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.566423 B = 4159.258821 C = 4750.278918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.989 3.011 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.559 4.559 8 H 0.066 0.934 9 C 0.213 3.787 10 O -0.336 6.336 11 C 0.125 3.875 12 C -0.230 4.230 13 C -0.074 4.074 14 C -0.142 4.142 15 C -0.074 4.074 16 C -0.176 4.176 17 C 0.095 3.905 18 N -0.662 5.662 19 C 0.086 3.914 20 H 0.275 0.725 21 H 0.001 0.999 22 H -0.001 1.001 23 H 0.114 0.886 24 H 0.156 0.844 25 H 0.162 0.838 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.361 0.639 29 H 0.112 0.888 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 -15.109 -1.383 15.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.811 3.189 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.084 0.916 9 C 0.140 3.860 10 O -0.250 6.250 11 C 0.078 3.922 12 C -0.249 4.249 13 C -0.092 4.092 14 C -0.160 4.160 15 C -0.075 4.075 16 C -0.178 4.178 17 C -0.034 4.034 18 N -0.292 5.292 19 C -0.042 4.042 20 H 0.084 0.916 21 H 0.019 0.981 22 H 0.017 0.983 23 H 0.132 0.868 24 H 0.173 0.827 25 H 0.180 0.820 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.178 0.822 29 H 0.130 0.870 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.332 -14.871 -0.650 15.254 hybrid contribution -0.191 1.342 -0.959 1.661 sum 3.141 -13.529 -1.610 13.981 Atomic orbital electron populations 1.70055 1.07782 1.29117 1.49442 1.25981 0.96037 1.03405 0.93341 0.85099 0.78321 0.76471 0.79036 1.19015 1.19597 1.18806 1.21312 0.94343 0.90167 1.53784 0.91596 1.20165 0.88428 0.82696 0.94744 1.86044 1.38728 1.12840 1.87434 1.19116 0.92551 0.84726 0.95817 1.21427 0.93484 0.99963 1.10064 1.21214 1.01292 0.90407 0.96274 1.20695 0.90920 1.00136 1.04297 1.20874 0.95499 0.93658 0.97427 1.20055 0.96705 0.92013 1.09006 1.21092 0.90207 0.92440 0.99632 1.63465 1.05584 1.01070 1.59131 1.21514 0.86258 0.94838 1.01573 0.91648 0.98139 0.98297 0.86818 0.82661 0.82035 0.92075 0.91062 0.82170 0.87013 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.29 21.45 0.28 -54.92 16 2 C 0.01 0.68 5.46 84.65 0.46 1.14 16 3 Si 0.99 44.05 29.54 68.60 2.03 46.08 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.56 -33.59 9.43 25.60 0.24 -33.35 16 8 H 0.07 3.91 7.81 -2.91 -0.02 3.88 16 9 C 0.21 12.30 4.49 71.24 0.32 12.62 16 10 O -0.34 -17.87 10.10 -92.38 -0.93 -18.81 16 11 C 0.12 5.60 6.68 22.49 0.15 5.75 16 12 C -0.23 -9.42 9.04 22.37 0.20 -9.22 16 13 C -0.07 -2.27 10.04 22.25 0.22 -2.05 16 14 C -0.14 -3.75 10.04 22.27 0.22 -3.53 16 15 C -0.07 -2.17 6.26 -19.68 -0.12 -2.29 16 16 C -0.18 -6.60 6.21 -19.59 -0.12 -6.72 16 17 C 0.10 3.02 7.44 85.48 0.64 3.66 16 18 N -0.66 -15.94 7.72 -514.70 -3.97 -19.92 16 19 C 0.09 1.83 7.45 85.49 0.64 2.47 16 20 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 21 H 0.00 0.05 7.66 -2.39 -0.02 0.03 16 22 H 0.00 -0.04 7.66 -2.39 -0.02 -0.06 16 23 H 0.11 5.04 6.30 -2.91 -0.02 5.02 16 24 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 25 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 26 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.36 6.26 8.92 -89.70 -0.80 5.46 16 29 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -69.13 259.86 0.61 -68.53 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.35 Total: 10.55 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 2.85 Total: -31.51 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -3.69 Total: -74.84 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.93 Total: -18.81 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -69.13 0.61 -68.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260563852.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.238 kcal (2) G-P(sol) polarization free energy of solvation -69.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds