Wall clock time and date at job start Mon Mar 30 2020 20:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00127 * 2 1 4 4 H 1.48502 * 109.46882 * 239.99872 * 3 2 1 5 5 H 1.48504 * 109.46824 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47430 * 119.99453 * 3 2 1 7 7 C 1.37876 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.50707 * 112.74563 * 309.66939 * 9 7 2 11 11 C 1.38287 * 119.96805 * 261.24178 * 10 9 7 12 12 C 1.38241 * 120.10676 * 180.02562 * 11 10 9 13 13 C 1.38168 * 120.05773 * 359.97438 * 12 11 10 14 14 C 1.38703 * 119.94277 * 0.02562 * 13 12 11 15 15 O 1.35903 * 120.05406 * 180.25131 * 14 13 12 16 16 C 1.38116 * 119.97093 * 81.26140 * 10 9 7 17 17 C 1.53506 * 113.53159 * 178.84368 * 9 7 2 18 18 C 1.53510 * 83.57653 * 271.24941 * 17 9 7 19 19 N 1.47480 * 113.47447 * 80.43348 * 9 7 2 20 20 H 0.96993 * 119.99900 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.94876 * 359.97438 * 11 10 9 22 22 H 1.08004 * 119.97428 * 180.02562 * 12 11 10 23 23 H 1.08008 * 120.02680 * 180.02562 * 13 12 11 24 24 H 0.96696 * 114.00399 * 269.72715 * 15 14 13 25 25 H 1.08000 * 120.03192 * 0.02696 * 16 10 9 26 26 H 1.08997 * 114.17078 * 24.90208 * 17 9 7 27 27 H 1.09002 * 114.16781 * 157.60192 * 17 9 7 28 28 H 1.08996 * 113.47454 * 219.20852 * 18 17 9 29 29 H 1.09003 * 113.47528 * 88.74525 * 18 17 9 30 30 H 1.00899 * 111.00148 * 199.50837 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 0.1910 -2.5600 1.0700 11 6 0.4490 -3.2116 2.2621 12 6 -0.5215 -3.2695 3.2448 13 6 -1.7519 -2.6758 3.0382 14 6 -2.0131 -2.0217 1.8434 15 8 -3.2208 -1.4326 1.6398 16 6 -1.0375 -1.9652 0.8584 17 6 2.1633 -3.7335 -0.0272 18 6 2.0620 -3.5606 -1.5492 19 7 0.7632 -2.8958 -1.3335 20 1 -0.4849 0.8400 -0.0004 21 1 1.4100 -3.6766 2.4254 22 1 -0.3176 -3.7786 4.1753 23 1 -2.5097 -2.7211 3.8066 24 1 -3.8781 -2.0133 1.2326 25 1 -1.2387 -1.4571 -0.0732 26 1 3.1610 -3.5603 0.3762 27 1 1.6957 -4.6426 0.3508 28 1 1.9825 -4.5041 -2.0890 29 1 2.8243 -2.9004 -1.9629 30 1 0.0185 -3.5726 -1.2597 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260638861.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:05 Heat of formation + Delta-G solvation = 32.593835 kcal Electronic energy + Delta-G solvation = -15014.423104 eV Core-core repulsion = 12583.513186 eV Total energy + Delta-G solvation = -2430.909918 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.45222 -37.91867 -35.49668 -32.63552 -29.86596 -28.83620 -26.53523 -25.84687 -23.39076 -21.37785 -20.87839 -19.17459 -17.41835 -16.12216 -15.57238 -14.81919 -14.70755 -14.35055 -13.75602 -13.52148 -12.85887 -12.53566 -12.03473 -11.84810 -11.37599 -11.30155 -10.92165 -10.81934 -10.59854 -10.47871 -10.31396 -9.78811 -9.39831 -9.02384 -8.65452 -7.64302 -7.56848 -7.22718 -5.82713 -4.23658 2.28756 2.54283 3.29720 3.35256 3.36135 4.35289 4.75639 5.03281 5.15989 5.47845 5.62085 5.77399 5.85324 5.99728 6.20418 6.28956 6.48739 6.59129 6.73035 6.81158 6.94440 7.01807 7.12573 7.35020 7.46045 7.58464 7.81480 7.89426 8.09569 8.15799 8.57555 8.67007 8.82388 9.46533 10.92215 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.014269 C = 0.010736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.660297 B = 1961.804273 C = 2607.363949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.077 3.923 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.486 4.486 8 H 0.064 0.936 9 C 0.250 3.750 10 C -0.044 4.044 11 C -0.129 4.129 12 C -0.144 4.144 13 C -0.163 4.163 14 C 0.053 3.947 15 O -0.501 6.501 16 C -0.044 4.044 17 C -0.197 4.197 18 C 0.024 3.976 19 N -0.638 5.638 20 H 0.264 0.736 21 H 0.107 0.893 22 H 0.106 0.894 23 H 0.105 0.895 24 H 0.370 0.630 25 H 0.171 0.829 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.644 -6.283 1.686 6.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.127 4.127 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.524 4.524 8 H 0.082 0.918 9 C 0.161 3.839 10 C -0.045 4.045 11 C -0.148 4.148 12 C -0.163 4.163 13 C -0.182 4.182 14 C 0.009 3.991 15 O -0.309 6.309 16 C -0.065 4.065 17 C -0.236 4.236 18 C -0.106 4.106 19 N -0.264 5.264 20 H 0.075 0.925 21 H 0.125 0.875 22 H 0.124 0.876 23 H 0.123 0.877 24 H 0.223 0.777 25 H 0.187 0.813 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.549 -4.906 1.394 5.330 hybrid contribution 0.285 -0.259 0.716 0.813 sum -1.264 -5.165 2.110 5.721 Atomic orbital electron populations 1.69640 1.05594 1.25867 1.48293 1.25029 0.94883 0.99257 0.93494 0.86566 0.79550 0.82742 0.78570 1.20084 1.21109 1.20290 1.20523 0.92234 0.88452 1.51193 0.91831 1.18850 0.88159 0.92414 0.84434 1.19996 0.94208 0.94587 0.95737 1.20884 0.98301 1.01439 0.94152 1.20592 0.94107 1.02803 0.98787 1.21080 0.98038 1.01265 0.97777 1.18652 0.86570 0.98968 0.94935 1.84870 1.21190 1.40995 1.83856 1.22078 0.91313 0.91423 1.01639 1.24641 1.01610 0.99664 0.97689 1.23126 0.96210 0.96789 0.94512 1.66210 1.02327 1.30783 1.27068 0.92478 0.87535 0.87639 0.87718 0.77707 0.81267 0.92190 0.91820 0.93950 0.89350 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.39 8.37 55.43 0.46 -22.92 16 2 C 0.08 2.06 5.33 -17.82 -0.09 1.97 16 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.49 -12.83 8.15 -34.44 -0.28 -13.11 16 8 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.25 5.89 0.91 -137.63 -0.13 5.76 16 10 C -0.04 -1.02 4.47 -104.65 -0.47 -1.49 16 11 C -0.13 -2.73 9.07 -39.56 -0.36 -3.08 16 12 C -0.14 -2.79 10.04 -39.61 -0.40 -3.19 16 13 C -0.16 -3.22 9.99 -39.44 -0.39 -3.62 16 14 C 0.05 1.14 6.70 -39.22 -0.26 0.88 16 15 O -0.50 -9.80 13.50 -19.43 -0.26 -10.07 16 16 C -0.04 -1.05 7.13 -39.44 -0.28 -1.33 16 17 C -0.20 -3.95 6.48 -26.21 -0.17 -4.12 16 18 C 0.02 0.47 8.28 -7.55 -0.06 0.41 16 19 N -0.64 -14.34 8.27 -110.92 -0.92 -15.26 16 20 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 21 H 0.11 2.09 7.24 -52.49 -0.38 1.71 16 22 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 23 H 0.10 1.82 8.06 -52.48 -0.42 1.39 16 24 H 0.37 5.15 9.06 45.56 0.41 5.57 16 25 H 0.17 4.39 6.01 -52.49 -0.32 4.08 16 26 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 27 H 0.06 1.17 7.74 -51.93 -0.40 0.77 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.81 7.99 -51.93 -0.41 1.39 16 30 H 0.30 6.32 8.53 -39.29 -0.34 5.98 16 LS Contribution 252.61 15.07 3.81 3.81 Total: -1.00 -28.96 252.61 -7.49 -36.45 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -2.67 Total: 12.83 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -2.90 Total: -20.91 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.45 Total: -38.18 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.26 Total: -10.07 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.96 -7.49 -36.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260638861.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.049 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds