Wall clock time and date at job start Mon Mar 30 2020 20:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99993 * 2 1 4 4 H 1.48492 * 109.47439 * 270.00165 * 3 2 1 5 5 H 1.48500 * 109.46757 * 30.00194 * 3 2 1 6 6 H 1.48499 * 109.47159 * 149.99895 * 3 2 1 7 7 C 1.37876 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00637 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99638 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.69695 * 300.00092 * 9 7 2 11 11 C 1.53408 * 109.72996 * 60.57872 * 9 7 2 12 12 O 1.42830 * 108.35687 * 184.47492 * 11 9 7 13 13 C 1.35856 * 117.86436 * 310.77710 * 12 11 9 14 14 C 1.39019 * 118.42538 * 197.01223 * 13 12 11 15 15 C 1.38632 * 120.16067 * 180.43409 * 14 13 12 16 16 N 1.39670 * 120.10292 * 179.97438 * 15 14 13 17 17 C 1.38979 * 119.79618 * 359.96279 * 15 14 13 18 18 C 1.37959 * 119.90925 * 359.92762 * 17 15 14 19 19 C 1.38459 * 121.80176 * 17.25762 * 13 12 11 20 20 C 1.50794 * 121.36552 * 359.49254 * 19 13 12 21 21 H 0.96996 * 120.00327 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.68267 * 304.18539 * 11 9 7 23 23 H 1.09000 * 109.68243 * 64.74462 * 11 9 7 24 24 H 1.07999 * 119.92190 * 0.38956 * 14 13 12 25 25 H 0.96994 * 120.00106 * 179.97438 * 16 15 14 26 26 H 0.96995 * 119.99900 * 359.97429 * 16 15 14 27 27 H 1.08006 * 120.04583 * 179.97438 * 17 15 14 28 28 H 1.07999 * 119.79176 * 180.02562 * 18 17 15 29 29 H 1.09003 * 109.43190 * 257.77112 * 20 19 13 30 30 H 1.09003 * 109.43503 * 137.90578 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6233 -2.5610 0.8884 11 6 0.3772 -2.5927 -1.2580 12 8 -0.4005 -3.7879 -1.1774 13 6 0.2433 -4.9453 -0.8743 14 6 -0.4001 -6.1491 -1.1381 15 6 0.2200 -7.3513 -0.8348 16 7 -0.4277 -8.5600 -1.0999 17 6 1.4883 -7.3501 -0.2665 18 6 2.1251 -6.1539 -0.0079 19 6 1.5081 -4.9507 -0.3110 20 6 2.2410 -3.6665 -0.0152 21 1 -0.4850 0.8400 -0.0004 22 1 -0.2835 -1.7276 -1.3111 23 1 1.0113 -2.6260 -2.1440 24 1 -1.3857 -6.1477 -1.5797 25 1 0.0077 -9.4003 -0.8874 26 1 -1.3129 -8.5591 -1.4964 27 1 1.9750 -8.2844 -0.0282 28 1 3.1108 -6.1552 0.4334 29 1 2.9943 -3.4935 -0.7838 30 1 2.7271 -3.7421 0.9576 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260651556.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:08 Heat of formation + Delta-G solvation = -28.154208 kcal Electronic energy + Delta-G solvation = -14462.338499 eV Core-core repulsion = 12028.794349 eV Total energy + Delta-G solvation = -2433.544151 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.76310 -37.29158 -34.33065 -33.69841 -31.39960 -29.59796 -28.20402 -24.98782 -24.23480 -22.31156 -21.50997 -18.90411 -17.19820 -16.83663 -16.41066 -15.16752 -14.91398 -14.34701 -14.26832 -13.89026 -13.15009 -12.89761 -12.55885 -12.44319 -12.20278 -11.52409 -11.18550 -11.00116 -10.87531 -10.51198 -10.20244 -9.71373 -9.48262 -9.30313 -8.87369 -8.48178 -7.70221 -6.93908 -6.12129 -4.18744 1.99390 2.15992 3.26130 3.33348 3.36484 3.96213 4.34641 4.36181 4.59774 5.19459 5.39988 5.57161 5.77857 5.97422 6.00524 6.36032 6.36427 6.40340 6.62812 6.74254 6.78734 6.87705 7.02600 7.13494 7.34167 7.51891 7.69500 7.79009 7.87752 7.96879 8.22160 8.52409 8.85579 9.47088 10.95288 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.067130 B = 0.007062 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.000872 B = 3963.712735 C = 4302.172893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.016 3.984 10 H 0.040 0.960 11 C 0.062 3.938 12 O -0.327 6.327 13 C 0.191 3.809 14 C -0.242 4.242 15 C 0.231 3.769 16 N -0.883 5.883 17 C -0.241 4.241 18 C -0.045 4.045 19 C -0.204 4.204 20 C -0.065 4.065 21 H 0.265 0.735 22 H 0.134 0.866 23 H 0.037 0.963 24 H 0.119 0.881 25 H 0.394 0.606 26 H 0.394 0.606 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.060 0.940 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.765 -11.967 -1.957 12.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.080 0.920 9 C -0.003 4.003 10 H 0.058 0.942 11 C -0.012 4.012 12 O -0.240 6.240 13 C 0.143 3.857 14 C -0.265 4.265 15 C 0.128 3.872 16 N -0.423 5.423 17 C -0.263 4.263 18 C -0.064 4.064 19 C -0.206 4.206 20 C -0.102 4.102 21 H 0.075 0.925 22 H 0.151 0.849 23 H 0.055 0.945 24 H 0.137 0.863 25 H 0.221 0.779 26 H 0.222 0.778 27 H 0.129 0.871 28 H 0.135 0.865 29 H 0.079 0.921 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.441 -11.724 -1.980 11.898 hybrid contribution 0.461 0.632 -0.017 0.782 sum 0.902 -11.092 -1.997 11.307 Atomic orbital electron populations 1.69823 1.05956 1.27022 1.50211 1.25049 0.94952 0.99457 0.94686 0.86496 0.79829 0.82967 0.78196 1.20543 1.21109 1.19788 1.21087 0.93122 0.89850 1.51204 0.92042 1.19294 0.93629 0.92755 0.94609 0.94230 1.23595 0.96188 0.82789 0.98622 1.85952 1.38750 1.15407 1.83940 1.18542 0.90207 0.86296 0.90620 1.19803 1.02747 0.89216 1.14767 1.17292 0.91368 0.85634 0.92898 1.42337 1.21536 1.04947 1.73450 1.20271 0.95901 0.97987 1.12158 1.20619 0.98378 0.91037 0.96396 1.20049 0.96372 0.96652 1.07555 1.20545 0.98093 0.91153 1.00405 0.92539 0.84905 0.94468 0.86256 0.77864 0.77834 0.87060 0.86537 0.92113 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 11.36 55.43 0.63 -24.41 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.51 -13.88 8.54 -34.44 -0.29 -14.17 16 8 H 0.06 1.62 7.75 -52.49 -0.41 1.21 16 9 C 0.02 0.40 2.32 -91.52 -0.21 0.19 16 10 H 0.04 1.12 8.14 -51.93 -0.42 0.69 16 11 C 0.06 1.53 6.15 37.37 0.23 1.76 16 12 O -0.33 -7.75 10.27 -19.29 -0.20 -7.95 16 13 C 0.19 4.08 6.47 -39.21 -0.25 3.83 16 14 C -0.24 -4.41 9.78 -39.15 -0.38 -4.79 16 15 C 0.23 3.61 6.75 -83.87 -0.57 3.04 16 16 N -0.88 -9.86 9.09 32.37 0.29 -9.56 16 17 C -0.24 -3.74 9.90 -39.41 -0.39 -4.13 16 18 C -0.05 -0.79 9.65 -39.56 -0.38 -1.17 16 19 C -0.20 -4.18 5.76 -104.37 -0.60 -4.78 16 20 C -0.06 -1.42 5.13 -27.80 -0.14 -1.56 16 21 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 22 H 0.13 3.56 6.07 -51.93 -0.32 3.24 16 23 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 25 H 0.39 3.44 8.84 -40.82 -0.36 3.08 16 26 H 0.39 3.73 8.84 -40.82 -0.36 3.37 16 27 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 28 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.06 1.30 8.09 -51.93 -0.42 0.88 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 253.82 15.07 3.83 3.83 Total: -1.00 -29.10 253.82 -7.09 -36.19 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -3.54 Total: 6.39 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -3.09 Total: -20.24 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.92 Total: -33.98 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.20 Total: -7.95 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.10 -7.09 -36.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260651556.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.037 kcal (2) G-P(sol) polarization free energy of solvation -29.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds