Wall clock time and date at job start Mon Mar 30 2020 20:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99993 * 2 1 4 4 H 1.48492 * 109.47439 * 270.00165 * 3 2 1 5 5 H 1.48500 * 109.46757 * 30.00194 * 3 2 1 6 6 H 1.48499 * 109.47159 * 149.99895 * 3 2 1 7 7 C 1.37876 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00637 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99638 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.69695 * 300.00092 * 9 7 2 11 11 C 1.53408 * 109.72996 * 60.57872 * 9 7 2 12 12 O 1.42830 * 108.35687 * 184.47492 * 11 9 7 13 13 C 1.35856 * 117.86436 * 310.77710 * 12 11 9 14 14 C 1.39019 * 118.42538 * 197.01223 * 13 12 11 15 15 C 1.38632 * 120.16067 * 180.43409 * 14 13 12 16 16 N 1.39670 * 120.10292 * 179.97438 * 15 14 13 17 17 C 1.38979 * 119.79618 * 359.96279 * 15 14 13 18 18 C 1.37959 * 119.90925 * 359.92762 * 17 15 14 19 19 C 1.38459 * 121.80176 * 17.25762 * 13 12 11 20 20 C 1.50794 * 121.36552 * 359.49254 * 19 13 12 21 21 H 0.96996 * 120.00327 * 0.02562 * 1 2 3 22 22 H 1.08993 * 109.68267 * 304.18539 * 11 9 7 23 23 H 1.09000 * 109.68243 * 64.74462 * 11 9 7 24 24 H 1.07999 * 119.92190 * 0.38956 * 14 13 12 25 25 H 0.96994 * 120.00106 * 179.97438 * 16 15 14 26 26 H 0.96995 * 119.99900 * 359.97429 * 16 15 14 27 27 H 1.08006 * 120.04583 * 179.97438 * 17 15 14 28 28 H 1.07999 * 119.79176 * 180.02562 * 18 17 15 29 29 H 1.09003 * 109.43190 * 257.77112 * 20 19 13 30 30 H 1.09003 * 109.43503 * 137.90578 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6233 -2.5610 0.8884 11 6 0.3772 -2.5927 -1.2580 12 8 -0.4005 -3.7879 -1.1774 13 6 0.2433 -4.9453 -0.8743 14 6 -0.4001 -6.1491 -1.1381 15 6 0.2200 -7.3513 -0.8348 16 7 -0.4277 -8.5600 -1.0999 17 6 1.4883 -7.3501 -0.2665 18 6 2.1251 -6.1539 -0.0079 19 6 1.5081 -4.9507 -0.3110 20 6 2.2410 -3.6665 -0.0152 21 1 -0.4850 0.8400 -0.0004 22 1 -0.2835 -1.7276 -1.3111 23 1 1.0113 -2.6260 -2.1440 24 1 -1.3857 -6.1477 -1.5797 25 1 0.0077 -9.4003 -0.8874 26 1 -1.3129 -8.5591 -1.4964 27 1 1.9750 -8.2844 -0.0282 28 1 3.1108 -6.1552 0.4334 29 1 2.9943 -3.4935 -0.7838 30 1 2.7271 -3.7421 0.9576 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260651556.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:08 Heat of formation + Delta-G solvation = -47.089030 kcal Electronic energy + Delta-G solvation = -14463.159575 eV Core-core repulsion = 12028.794349 eV Total energy + Delta-G solvation = -2434.365226 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.33497 -38.77316 -36.10754 -35.19810 -33.20774 -31.03506 -29.76207 -26.96862 -25.89959 -23.83743 -23.04861 -20.59649 -18.76465 -18.54272 -17.91003 -16.72271 -16.54164 -16.05639 -15.78337 -15.50090 -14.85495 -14.36033 -14.28410 -13.98040 -13.89556 -13.12725 -12.87361 -12.77526 -12.50715 -12.26701 -11.99935 -11.62888 -11.16953 -10.88165 -10.74632 -10.54061 -9.18036 -8.23603 -8.18272 -6.33713 0.61519 0.74538 1.43599 1.43816 1.55148 2.39524 2.59591 2.98726 3.09796 3.24727 4.05138 4.24334 4.29731 4.40505 4.49668 4.55718 4.75169 4.89334 4.93447 5.05854 5.14170 5.39520 5.46269 5.57973 5.65435 5.75949 5.83262 5.91139 6.20606 6.62010 6.74896 6.82044 7.11078 7.36196 8.88636 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.067130 B = 0.007062 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.000872 B = 3963.712735 C = 4302.172893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.014 3.986 10 H -0.002 1.002 11 C 0.075 3.925 12 O -0.347 6.347 13 C 0.152 3.848 14 C -0.254 4.254 15 C 0.244 3.756 16 N -0.861 5.861 17 C -0.230 4.230 18 C -0.042 4.042 19 C -0.234 4.234 20 C -0.055 4.055 21 H 0.266 0.734 22 H 0.107 0.893 23 H 0.038 0.962 24 H 0.126 0.874 25 H 0.411 0.589 26 H 0.405 0.595 27 H 0.151 0.849 28 H 0.142 0.858 29 H 0.061 0.939 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.938 -14.093 -1.990 14.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.083 0.917 9 C -0.004 4.004 10 H 0.017 0.983 11 C 0.001 3.999 12 O -0.261 6.261 13 C 0.105 3.895 14 C -0.278 4.278 15 C 0.137 3.863 16 N -0.402 5.402 17 C -0.252 4.252 18 C -0.061 4.061 19 C -0.237 4.237 20 C -0.092 4.092 21 H 0.075 0.925 22 H 0.124 0.876 23 H 0.056 0.944 24 H 0.144 0.856 25 H 0.242 0.758 26 H 0.234 0.766 27 H 0.169 0.831 28 H 0.159 0.841 29 H 0.080 0.920 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.605 -13.918 -2.020 14.155 hybrid contribution 0.041 1.075 0.001 1.076 sum 1.646 -12.843 -2.019 13.104 Atomic orbital electron populations 1.69973 1.07492 1.27881 1.50743 1.25895 0.95741 1.03002 0.94101 0.85424 0.78606 0.78412 0.78468 1.19732 1.20901 1.18955 1.21418 0.93443 0.90873 1.51474 0.91703 1.19205 0.93969 0.94194 0.93075 0.98336 1.23182 0.95393 0.83053 0.98302 1.85871 1.39229 1.15948 1.85064 1.18957 0.91460 0.86097 0.92964 1.19953 1.03246 0.89209 1.15350 1.17376 0.91432 0.86103 0.91347 1.42296 1.21817 1.04156 1.71931 1.20700 0.95484 0.98875 1.10152 1.20891 0.99318 0.90330 0.95529 1.20032 0.96636 0.97173 1.09855 1.20356 0.97222 0.90830 1.00764 0.92470 0.87566 0.94419 0.85587 0.75843 0.76560 0.83106 0.84052 0.92025 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.67 11.36 21.45 0.24 -53.43 16 2 C 0.01 0.63 5.30 84.66 0.45 1.08 16 3 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.53 -29.63 8.54 25.60 0.22 -29.41 16 8 H 0.06 3.46 7.75 -2.91 -0.02 3.43 16 9 C 0.01 0.76 2.32 -11.38 -0.03 0.73 16 10 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 11 C 0.08 3.94 6.15 72.12 0.44 4.38 16 12 O -0.35 -17.25 10.27 -91.94 -0.94 -18.20 16 13 C 0.15 6.58 6.47 22.51 0.15 6.73 16 14 C -0.25 -9.00 9.78 22.55 0.22 -8.78 16 15 C 0.24 6.80 6.75 38.16 0.26 7.06 16 16 N -0.86 -15.55 9.09 -51.50 -0.47 -16.02 16 17 C -0.23 -6.18 9.90 22.38 0.22 -5.96 16 18 C -0.04 -1.34 9.65 22.28 0.22 -1.13 16 19 C -0.23 -9.59 5.76 -19.70 -0.11 -9.70 16 20 C -0.05 -2.43 5.13 29.90 0.15 -2.28 16 21 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 22 H 0.11 6.07 6.07 -2.39 -0.01 6.06 16 23 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 25 H 0.41 5.07 8.84 -92.71 -0.82 4.25 16 26 H 0.41 6.11 8.84 -92.71 -0.82 5.29 16 27 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 28 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 29 H 0.06 2.66 8.09 -2.39 -0.02 2.64 16 30 H 0.07 2.81 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -65.03 253.82 2.57 -62.46 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -0.47 Total: 17.35 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 2.18 Total: -37.28 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -0.22 Total: -69.44 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.94 Total: -18.20 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -65.03 2.57 -62.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260651556.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.369 kcal (2) G-P(sol) polarization free energy of solvation -65.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds