Wall clock time and date at job start Mon Mar 30 2020 20:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 119.99978 * 2 1 4 4 H 1.48500 * 109.47531 * 270.00005 * 3 2 1 5 5 H 1.48499 * 109.47522 * 30.00036 * 3 2 1 6 6 H 1.48498 * 109.47194 * 149.99922 * 3 2 1 7 7 C 1.37872 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99953 * 185.08726 * 7 2 1 9 9 C 1.50701 * 120.00144 * 5.08710 * 7 2 1 10 10 H 1.08998 * 109.24169 * 25.38124 * 9 7 2 11 11 C 1.52814 * 109.29270 * 265.91397 * 9 7 2 12 12 C 1.53420 * 108.88655 * 188.40922 * 11 9 7 13 13 N 1.46921 * 107.79320 * 63.15687 * 12 11 9 14 14 C 1.39926 * 118.92157 * 315.24416 * 13 12 11 15 15 C 1.38981 * 119.08729 * 193.51426 * 14 13 12 16 16 C 1.38508 * 119.99093 * 180.36260 * 15 14 13 17 17 O 1.35897 * 120.10018 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.79594 * 0.02562 * 16 15 14 19 19 C 1.38029 * 120.09802 * 359.93433 * 18 16 15 20 20 C 1.38549 * 120.38831 * 359.95850 * 19 18 16 21 21 H 0.97004 * 119.99971 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.58372 * 68.57476 * 11 9 7 23 23 H 1.09000 * 109.64003 * 308.28183 * 11 9 7 24 24 H 1.09007 * 109.79711 * 303.58542 * 12 11 9 25 25 H 1.09006 * 109.79995 * 182.73007 * 12 11 9 26 26 H 0.97002 * 120.54148 * 135.22024 * 13 12 11 27 27 H 1.08000 * 120.00215 * 0.63338 * 15 14 13 28 28 H 0.96704 * 113.99916 * 90.00135 * 17 16 15 29 29 H 1.07998 * 119.95291 * 179.91601 * 18 16 15 30 30 H 1.08001 * 119.80165 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0813 -1.1960 0.0824 9 6 1.2554 -2.4965 -0.1168 10 1 0.3071 -2.3214 -0.6249 11 6 0.9828 -3.0488 1.2817 12 6 0.4118 -4.4669 1.1530 13 7 1.4394 -5.3095 0.5263 14 6 2.1343 -4.8164 -0.5836 15 6 2.8932 -5.6932 -1.3497 16 6 3.5947 -5.2238 -2.4480 17 8 4.3370 -6.0793 -3.1990 18 6 3.5370 -3.8770 -2.7791 19 6 2.7819 -3.0085 -2.0171 20 6 2.0762 -3.4721 -0.9186 21 1 -0.4850 0.8401 -0.0004 22 1 0.2623 -2.4101 1.7927 23 1 1.9118 -3.0794 1.8510 24 1 -0.4822 -4.4498 0.5295 25 1 0.1664 -4.8572 2.1408 26 1 1.6332 -6.1931 0.8765 27 1 2.9324 -6.7411 -1.0913 28 1 3.8510 -6.4833 -3.9309 29 1 4.0841 -3.5081 -3.6341 30 1 2.7409 -1.9615 -2.2788 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260693907.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:20 Heat of formation + Delta-G solvation = -46.207276 kcal Electronic energy + Delta-G solvation = -14610.019736 eV Core-core repulsion = 12175.692745 eV Total energy + Delta-G solvation = -2434.326990 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.94970 -38.76231 -36.01948 -35.54741 -33.11571 -30.67586 -29.80600 -27.52101 -24.60110 -23.65657 -23.03071 -20.54266 -19.04487 -18.47589 -17.79570 -16.86907 -16.58634 -16.12729 -15.43991 -14.91779 -14.77146 -14.35325 -14.14830 -13.84447 -13.43896 -13.01993 -12.86979 -12.82971 -12.43478 -12.19004 -11.68446 -11.41106 -11.06884 -11.03351 -10.71540 -10.46833 -9.29087 -8.21903 -8.05268 -6.20942 0.58380 0.77832 1.40132 1.41767 1.51417 2.42526 2.66913 2.99316 3.16591 3.55562 4.16337 4.31612 4.43319 4.47191 4.49930 4.71597 4.75969 4.85208 5.14255 5.19382 5.29597 5.48370 5.55744 5.66095 5.68148 5.83300 5.93736 6.14189 6.39371 6.49379 6.90836 6.99989 7.14001 7.44630 8.95267 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.010060 C = 0.007921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.668227 B = 2782.689501 C = 3534.019258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.512 4.512 8 H 0.044 0.956 9 C 0.075 3.925 10 H 0.026 0.974 11 C -0.114 4.114 12 C 0.129 3.871 13 N -0.743 5.743 14 C 0.209 3.791 15 C -0.223 4.223 16 C 0.128 3.872 17 O -0.506 6.506 18 C -0.210 4.210 19 C -0.065 4.065 20 C -0.149 4.149 21 H 0.262 0.738 22 H 0.048 0.952 23 H 0.040 0.960 24 H 0.046 0.954 25 H 0.101 0.899 26 H 0.410 0.590 27 H 0.142 0.858 28 H 0.407 0.593 29 H 0.131 0.869 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 -10.802 -2.117 11.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.550 4.550 8 H 0.063 0.937 9 C 0.056 3.944 10 H 0.044 0.956 11 C -0.153 4.153 12 C 0.004 3.996 13 N -0.376 5.376 14 C 0.106 3.894 15 C -0.246 4.246 16 C 0.083 3.917 17 O -0.318 6.318 18 C -0.231 4.231 19 C -0.084 4.084 20 C -0.154 4.154 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.120 0.880 26 H 0.246 0.754 27 H 0.160 0.840 28 H 0.265 0.735 29 H 0.149 0.851 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.739 -10.414 -1.645 10.893 hybrid contribution -0.044 0.898 -0.198 0.921 sum 2.695 -9.515 -1.843 10.060 Atomic orbital electron populations 1.70041 1.07120 1.27355 1.51665 1.25672 0.95597 1.02156 0.94819 0.85695 0.78739 0.79764 0.78350 1.19996 1.20835 1.19607 1.21255 0.92750 0.91377 1.49642 0.93742 1.17582 0.94190 0.91168 0.91448 0.95565 1.21789 0.99199 0.95278 0.98997 1.21584 0.89563 0.90514 0.97891 1.44533 1.41773 1.19694 1.31618 1.17618 0.92235 0.91215 0.88381 1.20903 1.04438 0.99854 0.99401 1.18031 0.92508 0.88671 0.92519 1.84723 1.39558 1.60989 1.46563 1.21237 1.04765 0.93582 1.03478 1.20878 0.94629 0.99208 0.93641 1.20183 1.03285 0.92660 0.99229 0.92888 0.93277 0.94116 0.93576 0.88035 0.75354 0.84000 0.73497 0.85143 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.41 12.84 21.45 0.28 -53.13 16 2 C 0.02 0.90 5.45 84.65 0.46 1.36 16 3 Si 0.95 43.90 29.54 68.60 2.03 45.92 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.51 -28.32 6.87 25.60 0.18 -28.14 16 8 H 0.04 2.50 7.80 -2.91 -0.02 2.48 16 9 C 0.07 3.79 2.32 -12.38 -0.03 3.76 16 10 H 0.03 1.51 7.38 -2.39 -0.02 1.49 16 11 C -0.11 -5.03 5.37 30.67 0.16 -4.87 16 12 C 0.13 4.36 7.11 86.44 0.61 4.97 16 13 N -0.74 -23.79 5.80 -337.72 -1.96 -25.75 16 14 C 0.21 7.91 6.47 38.13 0.25 8.16 16 15 C -0.22 -7.33 9.81 22.51 0.22 -7.11 16 16 C 0.13 4.21 6.70 22.47 0.15 4.36 16 17 O -0.51 -13.48 13.51 -92.39 -1.25 -14.72 16 18 C -0.21 -7.67 9.98 22.36 0.22 -7.45 16 19 C -0.06 -2.81 9.07 22.29 0.20 -2.60 16 20 C -0.15 -6.74 5.47 -19.72 -0.11 -6.85 16 21 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 22 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 23 H 0.04 1.83 8.12 -2.39 -0.02 1.81 16 24 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 26 H 0.41 10.07 8.86 -92.71 -0.82 9.25 16 27 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 28 H 0.41 6.42 9.06 -74.05 -0.67 5.75 16 29 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 30 H 0.11 5.12 7.24 -2.91 -0.02 5.10 16 Total: -1.00 -64.59 254.95 1.09 -63.50 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -0.33 Total: 18.59 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 2.32 Total: -34.41 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -1.68 Total: -78.88 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -1.25 Total: -14.72 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -64.59 1.09 -63.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260693907.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.290 kcal (2) G-P(sol) polarization free energy of solvation -64.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds