Wall clock time and date at job start Mon Mar 30 2020 20:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 109.69630 * 60.28128 * 9 7 2 11 11 C 1.53413 * 109.70619 * 299.71357 * 9 7 2 12 12 O 1.42820 * 108.37006 * 175.62612 * 11 9 7 13 13 C 1.35854 * 117.87796 * 49.19145 * 12 11 9 14 14 C 1.39224 * 118.47463 * 162.80459 * 13 12 11 15 15 C 1.38011 * 120.37409 * 179.81558 * 14 13 12 16 16 C 1.38158 * 120.04207 * 359.97438 * 15 14 13 17 17 C 1.38793 * 119.89535 * 0.05462 * 16 15 14 18 18 N 1.39671 * 119.91741 * 179.97438 * 17 16 15 19 19 C 1.38241 * 121.79033 * 342.75338 * 13 12 11 20 20 C 1.50782 * 121.45516 * 0.46105 * 19 13 12 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.68197 * 295.35093 * 11 9 7 23 23 H 1.08995 * 109.68220 * 55.86764 * 11 9 7 24 24 H 1.08003 * 119.81213 * 359.82945 * 14 13 12 25 25 H 1.07999 * 119.97586 * 179.97438 * 15 14 13 26 26 H 1.08005 * 120.05021 * 180.08345 * 16 15 14 27 27 H 0.97000 * 119.99803 * 0.02562 * 18 17 16 28 28 H 0.96998 * 119.99828 * 180.02562 * 18 17 16 29 29 H 1.08995 * 109.47847 * 222.16719 * 20 19 13 30 30 H 1.09000 * 109.39372 * 102.29318 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6230 -2.5647 -0.8831 11 6 0.3779 -2.5866 1.2637 12 8 -0.3984 -3.7831 1.1905 13 6 0.2462 -4.9414 0.8933 14 6 -0.3941 -6.1468 1.1680 15 6 0.2231 -7.3467 0.8784 16 6 1.4833 -7.3574 0.3122 17 6 2.1279 -6.1596 0.0362 18 7 3.4021 -6.1698 -0.5357 19 6 1.5086 -4.9485 0.3298 20 6 2.2412 -3.6664 0.0247 21 1 -0.4850 0.8400 0.0004 22 1 1.0123 -2.6141 2.1496 23 1 -0.2834 -1.7215 1.3125 24 1 -1.3795 -6.1427 1.6100 25 1 -0.2793 -8.2780 1.0946 26 1 1.9659 -8.2963 0.0843 27 1 3.8353 -7.0134 -0.7398 28 1 3.8537 -5.3334 -0.7287 29 1 2.7256 -3.7474 -0.9483 30 1 2.9957 -3.4894 0.7912 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260696640.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:24 Heat of formation + Delta-G solvation = -45.761379 kcal Electronic energy + Delta-G solvation = -14653.099702 eV Core-core repulsion = 12218.792047 eV Total energy + Delta-G solvation = -2434.307655 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.41124 -38.67113 -36.32983 -34.92680 -33.42419 -31.17378 -29.25366 -27.05975 -26.35688 -23.92674 -22.59171 -20.63951 -18.80564 -18.60482 -17.98613 -16.69472 -16.49496 -16.09344 -15.86819 -15.57400 -14.87294 -14.53569 -14.22592 -13.98200 -13.78169 -12.89917 -12.85413 -12.72664 -12.50041 -12.16210 -12.05700 -11.80248 -11.19390 -11.06806 -10.80703 -10.52036 -9.01665 -8.30783 -8.20431 -6.36205 0.62455 0.79442 1.40609 1.42282 1.54320 2.37688 2.70157 3.02147 3.06309 3.14039 4.08239 4.14835 4.25459 4.39074 4.55222 4.64877 4.73967 4.80102 4.95115 4.98317 5.12509 5.41313 5.45283 5.61207 5.67666 5.70609 5.78995 5.98721 6.17691 6.55074 6.73641 6.83674 7.08490 7.33890 8.86559 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.046770 B = 0.008318 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.534930 B = 3365.447751 C = 3884.893437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.017 3.983 10 H -0.003 1.003 11 C 0.073 3.927 12 O -0.346 6.346 13 C 0.146 3.854 14 C -0.232 4.232 15 C -0.038 4.038 16 C -0.237 4.237 17 C 0.241 3.759 18 N -0.864 5.864 19 C -0.259 4.259 20 C -0.048 4.048 21 H 0.266 0.734 22 H 0.036 0.964 23 H 0.107 0.893 24 H 0.126 0.874 25 H 0.161 0.839 26 H 0.151 0.849 27 H 0.410 0.590 28 H 0.400 0.600 29 H 0.065 0.935 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.852 -12.276 0.779 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.572 4.572 8 H 0.084 0.916 9 C -0.001 4.001 10 H 0.016 0.984 11 C -0.001 4.001 12 O -0.260 6.260 13 C 0.100 3.900 14 C -0.252 4.252 15 C -0.057 4.057 16 C -0.260 4.260 17 C 0.135 3.865 18 N -0.405 5.405 19 C -0.264 4.264 20 C -0.085 4.085 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.124 0.876 24 H 0.144 0.856 25 H 0.178 0.822 26 H 0.168 0.832 27 H 0.241 0.759 28 H 0.230 0.770 29 H 0.084 0.916 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.498 -12.118 0.824 12.952 hybrid contribution 0.557 1.429 -0.243 1.553 sum 5.055 -10.689 0.581 11.838 Atomic orbital electron populations 1.69980 1.07479 1.27849 1.50635 1.25898 0.95749 1.03019 0.94103 0.85377 0.79057 0.78767 0.77714 1.18690 1.20611 1.20348 1.21430 0.93429 0.90814 1.51530 0.91647 1.19163 0.93866 0.94049 0.93052 0.98438 1.23175 0.95467 0.83237 0.98228 1.85896 1.39118 1.15815 1.85173 1.19115 0.91233 0.86583 0.93043 1.20580 1.02868 0.90027 1.11774 1.20937 0.93776 0.97045 0.93923 1.20737 0.97850 0.96250 1.11156 1.17602 0.86215 0.92318 0.90406 1.42477 1.15953 1.11728 1.70306 1.19633 0.97746 0.95674 1.13395 1.20193 0.97271 0.90826 1.00223 0.92444 0.94536 0.87550 0.85596 0.82188 0.83167 0.75898 0.77045 0.91616 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.26 11.35 21.45 0.24 -53.02 16 2 C 0.01 0.62 5.30 84.65 0.45 1.07 16 3 Si 0.97 42.74 29.54 68.60 2.03 44.76 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.53 -29.27 8.54 25.60 0.22 -29.05 16 8 H 0.07 3.43 7.75 -2.91 -0.02 3.41 16 9 C 0.02 0.92 2.32 -11.38 -0.03 0.89 16 10 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 11 C 0.07 3.84 6.14 72.12 0.44 4.28 16 12 O -0.35 -17.22 10.27 -91.91 -0.94 -18.16 16 13 C 0.15 6.37 6.47 22.51 0.15 6.51 16 14 C -0.23 -8.20 9.93 22.45 0.22 -7.97 16 15 C -0.04 -1.05 10.03 22.20 0.22 -0.83 16 16 C -0.24 -6.35 9.89 22.38 0.22 -6.13 16 17 C 0.24 7.69 6.73 38.25 0.26 7.95 16 18 N -0.86 -20.96 8.98 -51.29 -0.46 -21.42 16 19 C -0.26 -10.53 5.77 -19.62 -0.11 -10.64 16 20 C -0.05 -2.08 4.34 29.90 0.13 -1.95 16 21 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 22 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.11 6.08 6.06 -2.39 -0.01 6.06 16 24 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 25 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 26 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 27 H 0.41 6.98 8.84 -92.71 -0.82 6.16 16 28 H 0.40 9.83 6.97 -92.71 -0.65 9.18 16 29 H 0.07 2.65 7.10 -2.39 -0.02 2.64 16 30 H 0.06 2.50 8.09 -2.39 -0.02 2.48 16 Total: -1.00 -64.40 250.49 2.74 -61.67 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -0.30 Total: 22.04 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 2.17 Total: -35.87 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -0.22 Total: -74.44 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.94 Total: -18.16 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -64.40 2.74 -61.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260696640.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.905 kcal (2) G-P(sol) polarization free energy of solvation -64.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds