Wall clock time and date at job start Mon Mar 30 2020 20:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00545 * 2 1 4 4 H 1.48495 * 109.47541 * 270.00055 * 3 2 1 5 5 H 1.48500 * 109.46955 * 30.00224 * 3 2 1 6 6 H 1.48502 * 109.47179 * 149.99493 * 3 2 1 7 7 C 1.37881 * 119.99410 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00247 * 0.02562 * 7 2 1 10 10 C 1.50693 * 112.95758 * 50.32764 * 9 7 2 11 11 C 1.38163 * 120.02868 * 249.66588 * 10 9 7 12 12 C 1.38251 * 120.05527 * 179.74173 * 11 10 9 13 13 C 1.38290 * 120.11123 * 0.24024 * 12 11 10 14 14 C 1.38121 * 120.05324 * 359.97438 * 13 12 11 15 15 C 1.38717 * 120.02742 * 69.89841 * 10 9 7 16 16 O 1.35896 * 120.05449 * 359.97438 * 15 10 9 17 17 C 1.53932 * 113.75721 * 181.98127 * 9 7 2 18 18 C 1.53934 * 86.34376 * 90.70370 * 17 9 7 19 19 N 1.47964 * 113.75430 * 278.68058 * 9 7 2 20 20 H 0.97003 * 119.99179 * 359.97438 * 1 2 3 21 21 H 1.08002 * 119.97507 * 0.02749 * 11 10 9 22 22 H 1.07998 * 119.94295 * 180.25934 * 12 11 10 23 23 H 1.07991 * 119.97073 * 180.02562 * 13 12 11 24 24 H 1.08007 * 120.02489 * 180.02562 * 14 13 12 25 25 H 0.96699 * 114.00130 * 270.29520 * 16 15 10 26 26 H 1.09009 * 113.72918 * 205.06202 * 17 9 7 27 27 H 1.08997 * 113.73605 * 336.34034 * 17 9 7 28 28 H 1.09003 * 113.75849 * 138.03327 * 18 17 9 29 29 H 1.08996 * 113.75881 * 269.29166 * 18 17 9 30 30 H 1.00901 * 110.99838 * 23.15740 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 0.1902 -2.5655 -1.0679 11 6 -1.1461 -2.5472 -0.7176 12 6 -2.1197 -2.6027 -1.6977 13 6 -1.7588 -2.6815 -3.0303 14 6 -0.4242 -2.7045 -3.3854 15 6 0.5548 -2.6498 -2.4036 16 8 1.8686 -2.6722 -2.7504 17 6 2.1601 -3.7403 0.0499 18 6 2.0403 -3.6454 1.5816 19 7 0.7753 -2.9129 1.3392 20 1 -0.4849 0.8401 0.0004 21 1 -1.4306 -2.4850 0.3224 22 1 -3.1637 -2.5840 -1.4221 23 1 -2.5211 -2.7242 -3.7940 24 1 -0.1429 -2.7657 -4.4264 25 1 2.2503 -1.7967 -2.9020 26 1 1.7031 -4.6359 -0.3713 27 1 3.1683 -3.5607 -0.3233 28 1 1.9039 -4.6093 2.0720 29 1 2.8173 -3.0383 2.0461 30 1 0.6926 -2.1179 1.9551 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260719353.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:30 Heat of formation + Delta-G solvation = 12.582515 kcal Electronic energy + Delta-G solvation = -15214.326589 eV Core-core repulsion = 12782.548915 eV Total energy + Delta-G solvation = -2431.777674 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.23666 -37.35145 -35.45606 -32.55068 -30.00447 -28.72524 -26.38228 -26.04634 -23.37208 -21.33369 -20.82898 -18.47163 -17.37325 -16.54070 -15.45298 -14.83434 -14.46164 -14.30433 -14.20718 -13.42072 -12.72608 -12.43783 -12.07100 -11.50182 -11.22047 -11.08947 -11.03384 -10.69883 -10.63428 -10.49679 -10.03469 -9.90046 -9.27102 -9.18528 -8.69219 -7.71797 -7.58096 -7.36037 -6.12127 -4.34266 2.37419 2.54407 3.16911 3.26128 3.28093 4.24568 4.76744 5.03798 5.43374 5.45978 5.81445 5.88057 6.00810 6.05282 6.19543 6.39192 6.51731 6.72542 6.84283 6.89310 6.99859 7.08437 7.15143 7.38592 7.44161 7.61873 7.70806 7.88212 7.99544 8.08936 8.62937 8.75113 8.82106 9.34981 10.82495 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.023056 B = 0.014933 C = 0.012271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.163904 B = 1874.574508 C = 2281.284633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.076 3.924 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.242 3.758 10 C -0.005 4.005 11 C -0.045 4.045 12 C -0.149 4.149 13 C -0.137 4.137 14 C -0.166 4.166 15 C 0.098 3.902 16 O -0.498 6.498 17 C -0.132 4.132 18 C 0.008 3.992 19 N -0.646 5.646 20 H 0.264 0.736 21 H 0.120 0.880 22 H 0.104 0.896 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.381 0.619 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.149 -2.612 -2.269 3.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.152 3.848 10 C -0.007 4.007 11 C -0.063 4.063 12 C -0.167 4.167 13 C -0.155 4.155 14 C -0.184 4.184 15 C 0.053 3.947 16 O -0.307 6.307 17 C -0.170 4.170 18 C -0.123 4.123 19 N -0.272 5.272 20 H 0.074 0.926 21 H 0.138 0.862 22 H 0.122 0.878 23 H 0.123 0.877 24 H 0.126 0.874 25 H 0.236 0.764 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.017 -3.700 -2.314 4.481 hybrid contribution 1.136 2.406 0.025 2.661 sum 0.120 -1.294 -2.290 2.633 Atomic orbital electron populations 1.70018 1.05613 1.26895 1.46983 1.25059 0.94910 0.99156 0.93943 0.86594 0.79922 0.83260 0.78286 1.20525 1.21120 1.19845 1.21077 0.92918 0.89168 1.54155 0.91832 1.18716 0.88233 0.91904 0.85903 1.19976 0.94754 0.92867 0.93072 1.20668 0.91668 0.94994 0.99002 1.20971 0.98622 1.03865 0.93224 1.20607 0.94939 1.04099 0.95873 1.21073 0.93172 1.06010 0.98176 1.18193 0.83081 1.02070 0.91323 1.84656 1.21883 1.33399 1.90757 1.23374 0.99898 0.98974 0.94738 1.23303 0.93936 0.98200 0.96848 1.67023 1.29836 1.23853 1.06454 0.92588 0.86166 0.87776 0.87729 0.87412 0.76389 0.91982 0.92388 0.92190 0.92898 0.87016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.45 11.09 55.43 0.61 -21.83 16 2 C 0.08 1.92 5.33 -17.82 -0.09 1.82 16 3 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.53 -13.40 7.85 -34.44 -0.27 -13.67 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.24 5.75 0.62 -132.85 -0.08 5.66 16 10 C -0.01 -0.12 3.74 -104.48 -0.39 -0.51 16 11 C -0.04 -1.04 8.21 -39.60 -0.32 -1.36 16 12 C -0.15 -3.04 10.04 -39.56 -0.40 -3.43 16 13 C -0.14 -2.65 10.04 -39.61 -0.40 -3.04 16 14 C -0.17 -3.36 9.99 -39.43 -0.39 -3.76 16 15 C 0.10 2.21 6.52 -39.21 -0.26 1.95 16 16 O -0.50 -10.49 12.17 -19.41 -0.24 -10.73 16 17 C -0.13 -2.87 6.70 -25.79 -0.17 -3.04 16 18 C 0.01 0.16 8.64 -2.65 -0.02 0.14 16 19 N -0.65 -14.79 7.25 -105.07 -0.76 -15.55 16 20 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 21 H 0.12 2.88 7.39 -52.49 -0.39 2.49 16 22 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 23 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 24 H 0.11 1.92 8.06 -52.48 -0.42 1.50 16 25 H 0.38 7.13 9.06 45.56 0.41 7.54 16 26 H 0.06 1.35 8.09 -51.92 -0.42 0.93 16 27 H 0.06 1.24 8.09 -51.93 -0.42 0.82 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.32 7.57 8.57 -39.29 -0.34 7.23 16 LS Contribution 256.82 15.07 3.87 3.87 Total: -1.00 -26.92 256.82 -7.15 -34.07 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -2.81 Total: 14.59 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -2.80 Total: -19.25 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.15 Total: -37.38 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.24 Total: -10.73 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.92 -7.15 -34.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260719353.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.653 kcal (2) G-P(sol) polarization free energy of solvation -26.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds