Wall clock time and date at job start Mon Mar 30 2020 20:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.72127 * 2 1 4 4 C 1.54418 * 110.97700 * 236.50035 * 2 1 3 5 5 C 1.51057 * 105.14945 * 267.82866 * 4 2 1 6 6 C 1.38628 * 131.51677 * 162.67337 * 5 4 2 7 7 C 1.38209 * 119.09377 * 179.85666 * 6 5 4 8 8 N 1.31885 * 120.71156 * 0.46245 * 7 6 5 9 9 C 1.31828 * 121.78739 * 359.74591 * 8 7 6 10 10 C 1.38335 * 120.75747 * 0.02716 * 9 8 7 11 11 C 1.51185 * 131.26927 * 179.97438 * 10 9 8 12 12 O 1.42907 * 110.29448 * 78.04939 * 11 10 9 13 13 C 1.50695 * 110.30006 * 316.00704 * 11 10 9 14 14 H 1.08007 * 120.00120 * 355.61608 * 13 11 10 15 15 C 1.37878 * 120.00044 * 175.61221 * 13 11 10 16 16 N 1.31518 * 120.00007 * 189.73175 * 15 13 11 17 17 Si 1.86801 * 120.00030 * 9.73440 * 15 13 11 18 18 H 1.48503 * 109.46689 * 84.59474 * 17 15 13 19 19 H 1.48502 * 109.47126 * 204.59645 * 17 15 13 20 20 H 1.48501 * 109.47141 * 324.59800 * 17 15 13 21 21 H 1.09001 * 109.47476 * 302.79274 * 1 2 3 22 22 H 1.09001 * 109.47470 * 62.78662 * 1 2 3 23 23 H 1.08996 * 109.47402 * 182.79153 * 1 2 3 24 24 H 1.08995 * 110.30311 * 148.91218 * 4 2 1 25 25 H 1.08997 * 110.30602 * 26.75106 * 4 2 1 26 26 H 1.08001 * 120.45251 * 0.28410 * 6 5 4 27 27 H 1.08005 * 119.64155 * 180.21605 * 7 6 5 28 28 H 1.08001 * 119.62241 * 179.97438 * 9 8 7 29 29 H 0.96705 * 113.99577 * 298.54658 * 12 11 10 30 30 H 0.96994 * 120.00199 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0828 -0.7958 -1.2023 5 6 2.2757 -2.2033 -0.6890 6 6 2.4379 -3.4094 -1.3530 7 6 2.6004 -4.5664 -0.6148 8 7 2.5929 -4.5308 0.7036 9 6 2.4369 -3.4024 1.3670 10 6 2.2733 -2.2039 0.6957 11 6 2.0784 -0.7940 1.2053 12 8 3.3258 -0.2458 1.6362 13 6 1.0834 -0.7800 2.3369 14 1 0.5741 -1.6896 2.6195 15 6 0.8232 0.3939 3.0117 16 7 0.1066 0.3736 4.1144 17 14 1.4884 2.0131 2.3597 18 1 0.5593 2.5529 1.3346 19 1 1.6109 2.9837 3.4770 20 1 2.8235 1.7899 1.7492 21 1 -0.3634 0.5566 0.8639 22 1 -0.3634 0.4700 -0.9139 23 1 -0.3634 -1.0264 0.0500 24 1 3.0356 -0.3776 -1.5268 25 1 1.3659 -0.7874 -2.0233 26 1 2.4441 -3.4434 -2.4325 27 1 2.7309 -5.5104 -1.1230 28 1 2.4360 -3.4137 2.4469 29 1 3.7377 -0.7304 2.3646 30 1 -0.0761 1.1994 4.5893 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260725143.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:33 Heat of formation + Delta-G solvation = -6.409043 kcal Electronic energy + Delta-G solvation = -15237.066779 eV Core-core repulsion = 12804.465570 eV Total energy + Delta-G solvation = -2432.601210 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.33716 -37.32387 -34.19995 -32.51206 -31.14529 -30.37904 -27.63692 -25.86143 -23.86564 -22.11139 -21.02793 -19.34710 -17.15336 -16.38697 -15.58724 -15.28351 -14.83424 -14.24380 -13.77728 -13.44542 -13.16099 -12.93548 -12.37624 -12.05562 -11.97568 -11.71098 -11.19876 -10.88620 -10.54974 -10.34395 -10.26948 -9.98842 -9.18438 -9.00635 -8.82413 -8.70227 -8.39821 -8.29075 -6.21154 -4.28178 1.66366 1.79227 3.31840 3.43345 3.62156 4.31578 4.44524 4.82306 4.91838 5.10290 5.21916 5.32371 5.51667 5.66971 5.69115 5.87743 5.99823 6.13983 6.23429 6.34243 6.42579 6.53570 6.54932 6.88931 6.98505 7.07999 7.23250 7.29080 7.52351 8.19607 8.48140 8.72993 8.90236 9.43444 10.88843 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.038666 B = 0.012339 C = 0.010974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.982440 B = 2268.622731 C = 2550.765653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 H 0.075 0.925 4 C -0.079 4.079 5 C -0.056 4.056 6 C -0.172 4.172 7 C 0.079 3.921 8 N -0.494 5.494 9 C 0.119 3.881 10 C -0.127 4.127 11 C 0.263 3.737 12 O -0.567 6.567 13 C -0.547 4.547 14 H 0.077 0.923 15 C 0.091 3.909 16 N -0.884 5.884 17 Si 0.863 3.137 18 H -0.281 1.281 19 H -0.301 1.301 20 H -0.223 1.223 21 H 0.072 0.928 22 H 0.033 0.967 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.123 0.877 27 H 0.148 0.852 28 H 0.155 0.845 29 H 0.364 0.636 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 -2.757 -9.483 10.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.116 4.116 5 C -0.064 4.064 6 C -0.192 4.192 7 C -0.078 4.078 8 N -0.203 5.203 9 C -0.037 4.037 10 C -0.129 4.129 11 C 0.222 3.778 12 O -0.374 6.374 13 C -0.584 4.584 14 H 0.095 0.905 15 C -0.114 4.114 16 N -0.520 5.520 17 Si 0.691 3.309 18 H -0.207 1.207 19 H -0.229 1.229 20 H -0.146 1.146 21 H 0.091 0.909 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.141 0.859 27 H 0.165 0.835 28 H 0.172 0.828 29 H 0.211 0.789 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.833 -3.018 -9.347 10.544 hybrid contribution 0.119 1.157 -0.284 1.198 sum 3.952 -1.861 -9.632 10.576 Atomic orbital electron populations 1.21639 0.93495 1.02161 1.00318 1.21966 0.96537 0.98684 0.93217 0.90656 1.21170 1.01066 0.90612 0.98703 1.20972 0.95004 0.95220 0.95179 1.21510 1.04429 0.92657 1.00585 1.22505 0.97717 0.97464 0.90103 1.67693 1.13456 1.29595 1.09509 1.22313 0.94367 0.86547 1.00495 1.22443 0.97098 0.98765 0.94627 1.18533 0.83606 0.82970 0.92646 1.86590 1.38011 1.57133 1.55626 1.21185 1.24678 0.97496 1.14994 0.90478 1.24902 0.93396 0.99440 0.93622 1.69958 1.38318 1.28288 1.15471 0.87296 0.82569 0.82519 0.78564 1.20705 1.22859 1.14561 0.90868 0.94769 0.92729 0.90357 0.90915 0.85868 0.83477 0.82779 0.78920 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 7.92 37.16 0.29 -2.14 16 2 C -0.09 -1.76 2.14 -89.14 -0.19 -1.95 16 3 H 0.08 1.59 5.72 -51.93 -0.30 1.30 16 4 C -0.08 -1.36 6.31 -26.97 -0.17 -1.53 16 5 C -0.06 -1.02 6.20 -104.22 -0.65 -1.67 16 6 C -0.17 -2.72 10.12 -39.45 -0.40 -3.12 16 7 C 0.08 1.27 11.19 -17.54 -0.20 1.07 16 8 N -0.49 -9.26 10.36 -13.22 -0.14 -9.40 16 9 C 0.12 2.38 10.86 -17.52 -0.19 2.19 16 10 C -0.13 -2.62 5.25 -104.26 -0.55 -3.17 16 11 C 0.26 5.87 0.65 -91.96 -0.06 5.81 16 12 O -0.57 -12.55 9.92 -35.23 -0.35 -12.90 16 13 C -0.55 -14.22 7.17 -34.44 -0.25 -14.46 16 14 H 0.08 2.21 7.88 -52.48 -0.41 1.80 16 15 C 0.09 2.48 4.71 -17.82 -0.08 2.40 16 16 N -0.88 -25.72 13.96 55.43 0.77 -24.95 16 17 Si 0.86 20.87 22.94 -169.99 -3.90 16.97 16 18 H -0.28 -6.60 6.96 56.52 0.39 -6.21 16 19 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 20 H -0.22 -5.27 5.20 56.52 0.29 -4.98 16 21 H 0.07 1.68 5.10 -51.93 -0.26 1.41 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 1.13 8.09 -51.93 -0.42 0.71 16 24 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 25 H 0.07 1.09 7.91 -51.93 -0.41 0.68 16 26 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.15 1.82 8.06 -52.48 -0.42 1.40 16 28 H 0.15 3.01 8.06 -52.49 -0.42 2.59 16 29 H 0.36 7.15 9.07 45.56 0.41 7.56 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 241.51 15.07 3.64 3.64 Total: -1.00 -29.72 241.51 -5.17 -34.89 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -2.76 Total: 8.32 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -2.44 Total: -16.57 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.64 Total: -34.35 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.35 Total: -12.90 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -3.90 Total: 16.97 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.72 -5.17 -34.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260725143.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.479 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds