Wall clock time and date at job start Mon Mar 30 2020 20:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.72127 * 2 1 4 4 C 1.54417 * 110.97583 * 123.49296 * 2 1 3 5 5 C 1.51061 * 105.14761 * 144.46094 * 4 2 1 6 6 C 1.38623 * 131.51433 * 162.95560 * 5 4 2 7 7 C 1.38211 * 119.09660 * 180.02562 * 6 5 4 8 8 N 1.31894 * 120.71116 * 0.02562 * 7 6 5 9 9 C 1.31834 * 121.78237 * 359.97438 * 8 7 6 10 10 C 1.38347 * 120.75786 * 359.97438 * 9 8 7 11 11 C 1.51185 * 131.26585 * 180.02562 * 10 9 8 12 12 O 1.42903 * 110.29727 * 78.14503 * 11 10 9 13 13 C 1.50700 * 110.37982 * 316.04567 * 11 10 9 14 14 H 1.08003 * 119.99759 * 127.49458 * 13 11 10 15 15 C 1.37875 * 120.00266 * 307.50325 * 13 11 10 16 16 N 1.31516 * 120.00155 * 186.31527 * 15 13 11 17 17 Si 1.86804 * 120.00048 * 6.30956 * 15 13 11 18 18 H 1.48500 * 109.46819 * 84.43016 * 17 15 13 19 19 H 1.48493 * 109.47144 * 204.43262 * 17 15 13 20 20 H 1.48502 * 109.46671 * 324.43328 * 17 15 13 21 21 H 1.08994 * 109.47096 * 183.37655 * 1 2 3 22 22 H 1.08995 * 109.47367 * 303.38360 * 1 2 3 23 23 H 1.09003 * 109.46402 * 63.37766 * 1 2 3 24 24 H 1.08997 * 110.30894 * 263.38115 * 4 2 1 25 25 H 1.09004 * 110.30640 * 25.54412 * 4 2 1 26 26 H 1.08000 * 120.45765 * 359.97438 * 6 5 4 27 27 H 1.07998 * 119.65157 * 179.97438 * 7 6 5 28 28 H 1.08000 * 119.62173 * 180.02562 * 9 8 7 29 29 H 0.96703 * 113.99753 * 295.77391 * 12 11 10 30 30 H 0.96999 * 120.00089 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0828 -0.7957 1.2024 5 6 3.3320 -1.4715 0.6879 6 6 4.4028 -2.0507 1.3508 7 6 5.4302 -2.6059 0.6116 8 7 5.3978 -2.5874 -0.7068 9 6 4.3953 -2.0450 -1.3691 10 6 3.3311 -1.4711 -0.6967 11 6 2.0784 -0.7944 -1.2052 12 8 1.1261 -1.7706 -1.6321 13 6 2.4107 0.1414 -2.3387 14 1 1.8787 0.0651 -3.2755 15 6 3.3939 1.0948 -2.1800 16 7 3.5993 1.9906 -3.1208 17 14 4.4342 1.1145 -0.6285 18 1 5.5638 0.1621 -0.7780 19 1 4.9664 2.4829 -0.4067 20 1 3.5992 0.7138 0.5323 21 1 -0.3633 -1.0258 0.0605 22 1 -0.3634 0.5654 0.8580 23 1 -0.3632 0.4605 -0.9188 24 1 2.3283 -0.1205 2.0222 25 1 1.3570 -1.5404 1.5291 26 1 4.4343 -2.0672 2.4303 27 1 6.2690 -3.0592 1.1189 28 1 4.4044 -2.0496 -2.4491 29 1 1.4170 -2.2998 -2.3874 30 1 4.2913 2.6611 -3.0093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260725146.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:34 Heat of formation + Delta-G solvation = 0.106492 kcal Electronic energy + Delta-G solvation = -15477.825094 eV Core-core repulsion = 13045.506419 eV Total energy + Delta-G solvation = -2432.318675 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.50270 -37.28403 -34.15320 -32.62396 -31.10742 -30.59171 -27.52418 -26.22419 -23.61301 -21.71833 -21.00986 -19.63909 -17.10706 -16.49979 -15.75775 -15.49657 -15.02058 -13.99109 -13.74930 -13.41923 -13.26829 -12.86383 -12.57833 -12.01793 -11.85643 -11.43882 -11.35489 -10.89478 -10.53456 -10.48029 -10.18920 -9.85346 -9.66363 -8.96948 -8.79381 -8.75278 -8.53817 -8.10666 -6.26099 -4.30696 1.68505 1.82162 3.23155 3.27739 3.38323 4.27005 4.39263 4.85253 4.92340 5.08721 5.30015 5.40473 5.55895 5.64544 5.78535 5.84240 6.06986 6.14163 6.19735 6.36958 6.39735 6.48633 6.60155 6.88075 6.89152 7.07002 7.16413 7.29639 7.46559 8.28445 8.53355 8.56131 8.84857 9.38278 10.84641 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.023917 B = 0.019137 C = 0.014682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.443140 B = 1462.789403 C = 1906.695992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 H 0.087 0.913 4 C -0.080 4.080 5 C -0.046 4.046 6 C -0.183 4.183 7 C 0.085 3.915 8 N -0.495 5.495 9 C 0.132 3.868 10 C -0.161 4.161 11 C 0.276 3.724 12 O -0.557 6.557 13 C -0.545 4.545 14 H 0.084 0.916 15 C 0.089 3.911 16 N -0.885 5.885 17 Si 0.837 3.163 18 H -0.270 1.270 19 H -0.297 1.297 20 H -0.230 1.230 21 H 0.055 0.945 22 H 0.037 0.963 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.123 0.877 27 H 0.148 0.852 28 H 0.155 0.845 29 H 0.367 0.633 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.068 -5.984 8.407 10.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.099 4.099 3 H 0.105 0.895 4 C -0.117 4.117 5 C -0.054 4.054 6 C -0.203 4.203 7 C -0.072 4.072 8 N -0.205 5.205 9 C -0.024 4.024 10 C -0.164 4.164 11 C 0.234 3.766 12 O -0.362 6.362 13 C -0.582 4.582 14 H 0.102 0.898 15 C -0.115 4.115 16 N -0.521 5.521 17 Si 0.665 3.335 18 H -0.195 1.195 19 H -0.225 1.225 20 H -0.154 1.154 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.141 0.859 27 H 0.165 0.835 28 H 0.172 0.828 29 H 0.213 0.787 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.618 -5.929 8.369 10.275 hybrid contribution 0.669 0.415 0.797 1.120 sum 0.051 -5.514 9.166 10.697 Atomic orbital electron populations 1.21411 0.94329 1.01254 1.00738 1.22290 0.96353 0.98886 0.92417 0.89454 1.21256 0.93201 0.98280 0.98970 1.20937 0.95105 0.94087 0.95294 1.21500 0.95476 1.02687 1.00611 1.22505 0.97337 0.97183 0.90178 1.67692 1.25848 1.17456 1.09465 1.22239 0.87934 0.91719 1.00550 1.22824 1.00246 0.98455 0.94854 1.18465 0.80375 0.84910 0.92817 1.86340 1.45008 1.52279 1.52569 1.21410 1.21052 1.15780 0.99966 0.89806 1.24860 0.96359 0.94385 0.95945 1.69895 1.32306 1.16052 1.33821 0.87835 0.82344 0.77329 0.86040 1.19542 1.22455 1.15403 0.92555 0.94406 0.91957 0.91366 0.90149 0.85870 0.83500 0.82769 0.78727 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.60 37.16 0.32 -1.87 16 2 C -0.08 -1.67 2.32 -89.13 -0.21 -1.87 16 3 H 0.09 1.95 5.29 -51.93 -0.27 1.68 16 4 C -0.08 -1.46 5.50 -26.96 -0.15 -1.60 16 5 C -0.05 -0.91 4.09 -104.22 -0.43 -1.34 16 6 C -0.18 -3.19 10.12 -39.45 -0.40 -3.59 16 7 C 0.08 1.51 11.19 -17.53 -0.20 1.31 16 8 N -0.50 -10.16 10.36 -13.22 -0.14 -10.30 16 9 C 0.13 2.83 9.11 -17.51 -0.16 2.67 16 10 C -0.16 -3.47 2.82 -104.26 -0.29 -3.77 16 11 C 0.28 6.17 0.90 -91.95 -0.08 6.08 16 12 O -0.56 -11.53 11.53 -35.23 -0.41 -11.94 16 13 C -0.55 -14.41 8.87 -34.44 -0.31 -14.72 16 14 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 15 C 0.09 2.46 5.30 -17.82 -0.09 2.36 16 16 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 17 Si 0.84 20.63 22.23 -169.99 -3.78 16.85 16 18 H -0.27 -6.89 6.35 56.52 0.36 -6.53 16 19 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 20 H -0.23 -5.16 3.00 56.52 0.17 -4.99 16 21 H 0.06 0.99 7.42 -51.93 -0.39 0.61 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.07 1.13 7.95 -51.93 -0.41 0.72 16 25 H 0.08 1.32 7.85 -51.93 -0.41 0.92 16 26 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 27 H 0.15 2.05 8.06 -52.49 -0.42 1.62 16 28 H 0.16 3.24 8.06 -52.49 -0.42 2.81 16 29 H 0.37 6.58 9.07 45.56 0.41 6.99 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 237.75 15.07 3.58 3.58 Total: -1.00 -30.54 237.75 -4.97 -35.52 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -3.01 Total: 8.09 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -1.99 Total: -16.33 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.64 Total: -35.77 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.41 Total: -11.94 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -3.78 Total: 16.85 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.54 -4.97 -35.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260725146.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.625 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds