Wall clock time and date at job start Mon Mar 30 2020 20:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99685 * 2 1 4 4 H 1.48506 * 109.46788 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47273 * 299.99176 * 3 2 1 6 6 H 1.48498 * 109.47387 * 59.99975 * 3 2 1 7 7 C 1.37871 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00266 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.79317 * 59.99333 * 9 7 2 11 11 C 1.53434 * 109.80062 * 180.80089 * 9 7 2 12 12 C 1.52843 * 108.85429 * 182.86559 * 11 9 7 13 13 C 1.50595 * 110.51563 * 308.59784 * 12 11 9 14 14 C 1.38517 * 118.88803 * 200.65202 * 13 12 11 15 15 C 1.38527 * 120.27220 * 180.14806 * 14 13 12 16 16 O 1.36007 * 119.98177 * 180.02562 * 15 14 13 17 17 C 1.38725 * 120.04177 * 0.02562 * 15 14 13 18 18 C 1.38021 * 119.85284 * 359.91455 * 17 15 14 19 19 C 1.38576 * 121.50665 * 20.67163 * 13 12 11 20 20 N 1.40215 * 120.79592 * 359.54199 * 19 13 12 21 21 H 0.97000 * 120.00504 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.57184 * 302.67640 * 11 9 7 23 23 H 1.08998 * 109.57130 * 62.92902 * 11 9 7 24 24 H 1.09002 * 109.27086 * 68.87054 * 12 11 9 25 25 H 1.09003 * 109.26115 * 188.36789 * 12 11 9 26 26 H 1.08006 * 119.86603 * 0.14482 * 14 13 12 27 27 H 0.96702 * 114.00103 * 270.00770 * 16 15 14 28 28 H 1.08007 * 120.07207 * 179.90118 * 17 15 14 29 29 H 1.08001 * 119.94482 * 179.97438 * 18 17 15 30 30 H 0.96998 * 120.54628 * 193.52436 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6226 -2.5626 -0.8878 11 6 2.2413 -3.6709 0.0214 12 6 1.4577 -4.9812 -0.0513 13 6 0.3771 -5.0087 0.9973 14 6 -0.1466 -6.2306 1.3866 15 6 -1.1436 -6.2891 2.3465 16 8 -1.6532 -7.4920 2.7247 17 6 -1.6227 -5.1214 2.9223 18 6 -1.1025 -3.9022 2.5379 19 6 -0.1004 -3.8436 1.5759 20 7 0.4182 -2.5941 1.2072 21 1 -0.4851 0.8400 -0.0004 22 1 2.9112 -3.5981 -0.8353 23 1 2.8225 -3.6415 0.9430 24 1 1.0040 -5.0748 -1.0380 25 1 2.1383 -5.8168 0.1122 26 1 0.2239 -7.1414 0.9398 27 1 -2.4137 -7.7793 2.2009 28 1 -2.4012 -5.1663 3.6696 29 1 -1.4746 -2.9922 2.9849 30 1 0.2305 -1.8058 1.7402 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260739599.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:37 Heat of formation + Delta-G solvation = -32.339223 kcal Electronic energy + Delta-G solvation = -14477.214460 eV Core-core repulsion = 12043.488834 eV Total energy + Delta-G solvation = -2433.725627 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.41799 -37.26332 -34.79190 -32.81087 -32.01550 -29.47945 -28.15440 -25.52314 -23.19052 -21.88785 -21.64962 -19.02782 -17.26158 -16.96096 -16.10506 -15.24136 -14.70567 -14.64017 -13.99188 -13.44526 -13.05131 -12.75339 -12.41169 -12.22642 -12.06955 -11.71741 -11.17738 -11.08386 -10.78870 -10.55651 -10.34957 -9.99816 -9.68826 -9.22738 -8.90779 -8.64169 -8.15198 -6.29107 -6.18416 -4.40676 1.98312 2.19052 3.15271 3.25060 3.28783 4.22415 4.33655 4.63414 4.86488 5.24910 5.42748 5.51675 5.76613 5.90371 5.95373 6.16331 6.24079 6.41325 6.62932 6.70167 6.72413 6.83757 6.88422 7.08574 7.18900 7.38169 7.49075 7.68844 7.90838 8.19956 8.50415 8.81354 9.15049 9.30081 10.77410 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.052700 B = 0.007593 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.178098 B = 3686.535856 C = 4093.281393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.069 3.931 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.532 4.532 8 H 0.067 0.933 9 C 0.270 3.730 10 H 0.031 0.969 11 C -0.127 4.127 12 C -0.068 4.068 13 C -0.159 4.159 14 C -0.093 4.093 15 C 0.002 3.998 16 O -0.503 6.503 17 C -0.096 4.096 18 C -0.201 4.201 19 C 0.235 3.765 20 N -0.701 5.701 21 H 0.265 0.735 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.114 0.886 27 H 0.369 0.631 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 -7.607 1.672 7.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.135 4.135 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.168 3.832 10 H 0.048 0.952 11 C -0.165 4.165 12 C -0.105 4.105 13 C -0.164 4.164 14 C -0.112 4.112 15 C -0.044 4.044 16 O -0.310 6.310 17 C -0.115 4.115 18 C -0.224 4.224 19 C 0.123 3.877 20 N -0.323 5.323 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.132 0.868 27 H 0.222 0.778 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -1.058 -7.375 1.882 7.685 hybrid contribution -0.220 1.194 -0.096 1.218 sum -1.277 -6.181 1.787 6.560 Atomic orbital electron populations 1.69980 1.05931 1.27219 1.48499 1.25150 0.94972 0.99696 0.93721 0.86445 0.80236 0.83042 0.77794 1.19512 1.20742 1.20809 1.21316 0.93511 0.89918 1.52305 0.91482 1.18830 0.87710 0.92439 0.84242 0.95158 1.21906 0.98574 0.94770 1.01272 1.20304 0.95099 0.98608 0.96487 1.19131 1.02234 0.91184 1.03894 1.20954 0.97180 0.96841 0.96256 1.17933 1.00670 0.84323 1.01507 1.84900 1.50435 1.35099 1.60595 1.20958 0.99476 0.91670 0.99411 1.20538 1.00847 0.97352 1.03698 1.18068 0.90314 0.87551 0.91791 1.46250 1.52214 1.04771 1.29114 0.92486 0.91850 0.92550 0.91973 0.92238 0.86786 0.77850 0.86779 0.86532 0.76118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.59 12.37 55.43 0.69 -22.90 16 2 C 0.07 1.79 5.21 -17.82 -0.09 1.70 16 3 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -13.67 8.71 -34.44 -0.30 -13.97 16 8 H 0.07 1.70 7.75 -52.48 -0.41 1.30 16 9 C 0.27 6.47 2.76 -68.63 -0.19 6.29 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.13 -2.58 5.36 -26.59 -0.14 -2.73 16 12 C -0.07 -1.24 5.77 -28.01 -0.16 -1.40 16 13 C -0.16 -3.11 5.76 -104.45 -0.60 -3.71 16 14 C -0.09 -1.65 9.60 -39.37 -0.38 -2.02 16 15 C 0.00 0.03 6.70 -39.29 -0.26 -0.23 16 16 O -0.50 -7.64 13.50 -19.76 -0.27 -7.91 16 17 C -0.10 -1.67 9.99 -39.48 -0.39 -2.06 16 18 C -0.20 -3.86 9.87 -39.37 -0.39 -4.24 16 19 C 0.23 4.96 6.48 -83.60 -0.54 4.42 16 20 N -0.70 -16.26 5.27 -52.70 -0.28 -16.54 16 21 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 22 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 26 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 27 H 0.37 3.81 9.06 45.56 0.41 4.23 16 28 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.40 9.75 7.73 -40.82 -0.32 9.43 16 LS Contribution 255.93 15.07 3.86 3.86 Total: -1.00 -27.65 255.93 -7.30 -34.95 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -2.83 Total: 11.56 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -3.45 Total: -17.97 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.41 Total: -39.44 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.27 Total: -7.91 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.65 -7.30 -34.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260739599.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.616 kcal (2) G-P(sol) polarization free energy of solvation -27.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds