Wall clock time and date at job start Mon Mar 30 2020 20:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37978 * 119.95672 * 2 1 4 4 C 1.38651 * 120.49361 * 180.02562 * 3 2 1 5 5 C 1.37671 * 120.39434 * 0.22531 * 4 3 2 6 6 C 1.40022 * 119.89389 * 359.47912 * 5 4 3 7 7 C 1.46663 * 120.23723 * 180.27216 * 6 5 4 8 8 O 1.21317 * 119.99572 * 185.76127 * 7 6 5 9 9 C 1.50693 * 120.00008 * 5.75656 * 7 6 5 10 10 C 1.50704 * 109.47057 * 180.02562 * 9 7 6 11 11 H 1.07995 * 119.99601 * 0.02562 * 10 9 7 12 12 C 1.37878 * 120.00071 * 180.02562 * 10 9 7 13 13 N 1.31519 * 119.99751 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99939 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47350 * 60.00061 * 14 12 10 16 16 H 1.48505 * 109.46993 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47057 * 299.99598 * 14 12 10 18 18 C 1.38916 * 119.95290 * 179.97438 * 2 1 3 19 19 N 1.38703 * 120.19974 * 0.02562 * 18 2 1 20 20 H 1.09006 * 109.46878 * 90.00075 * 1 2 3 21 21 H 1.08996 * 109.47334 * 210.00034 * 1 2 3 22 22 H 1.09004 * 109.46885 * 330.00355 * 1 2 3 23 23 H 1.08001 * 119.75211 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.80690 * 179.97438 * 4 3 2 25 25 H 1.07997 * 120.05114 * 179.72448 * 5 4 3 26 26 H 1.08999 * 109.47469 * 299.99934 * 9 7 6 27 27 H 1.08997 * 109.47432 * 60.00494 * 9 7 6 28 28 H 0.97002 * 119.99598 * 179.97438 * 13 12 10 29 29 H 0.97001 * 119.99645 * 24.93899 * 19 18 2 30 30 H 0.96998 * 119.99922 * 204.93774 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1954 0.0000 4 6 3.5824 1.2084 -0.0005 5 6 4.2901 0.0275 -0.0057 6 6 3.6075 -1.1951 0.0005 7 6 4.3539 -2.4576 0.0010 8 8 3.7622 -3.5120 -0.0990 9 6 5.8556 -2.4451 0.1258 10 6 6.3736 -3.8600 0.0994 11 1 5.6844 -4.6856 0.0017 12 6 7.7276 -4.1005 0.2001 13 7 8.5669 -3.0949 0.3187 14 14 8.3697 -5.8543 0.1667 15 1 7.9855 -6.4978 -1.1152 16 1 9.8496 -5.8420 0.2898 17 1 7.7848 -6.6172 1.2985 18 6 2.2006 -1.2036 0.0005 19 7 1.5103 -2.4067 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3633 0.8901 0.5138 23 1 1.6512 2.1280 -0.0004 24 1 4.1105 2.1506 -0.0009 25 1 5.3699 0.0441 -0.0106 26 1 6.2847 -1.8859 -0.7057 27 1 6.1382 -1.9719 1.0661 28 1 9.5194 -3.2641 0.3899 29 1 0.6084 -2.4483 -0.3540 30 1 1.9295 -3.2063 0.3551 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260752546.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:43 Heat of formation + Delta-G solvation = -23.173898 kcal Electronic energy + Delta-G solvation = -14169.092102 eV Core-core repulsion = 11735.763914 eV Total energy + Delta-G solvation = -2433.328188 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.71107 -37.52509 -34.38907 -32.88667 -32.29950 -29.62729 -28.22178 -26.48699 -24.29102 -22.32701 -20.98834 -18.69801 -16.95153 -16.52522 -16.26945 -15.25804 -14.76681 -14.30476 -13.94048 -13.65302 -13.46053 -13.40370 -12.95280 -12.21395 -11.98073 -11.84145 -11.39910 -11.14384 -10.94273 -10.80620 -10.58827 -10.19528 -9.98969 -9.24893 -8.46423 -8.38965 -8.37104 -7.26411 -6.03718 -4.04082 1.28060 1.87202 3.25888 3.36813 3.39438 3.44347 4.29058 4.29901 4.45906 4.92684 5.02905 5.29135 5.33995 5.41631 5.61374 5.63731 5.77307 5.80833 6.10846 6.29922 6.44408 6.70570 6.80895 6.85957 7.17705 7.27347 7.38991 7.82265 7.95649 8.17196 8.26230 8.75766 9.04692 9.60450 11.08413 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.050600 B = 0.006941 C = 0.006136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.223843 B = 4032.775972 C = 4562.041524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.186 4.186 3 C -0.057 4.057 4 C -0.191 4.191 5 C -0.028 4.028 6 C -0.234 4.234 7 C 0.401 3.599 8 O -0.478 6.478 9 C -0.020 4.020 10 C -0.516 4.516 11 H 0.071 0.929 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.899 3.101 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.261 3.739 19 N -0.863 5.863 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.117 0.883 24 H 0.120 0.880 25 H 0.135 0.865 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.262 0.738 29 H 0.389 0.611 30 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.780 8.194 -0.349 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.190 4.190 3 C -0.076 4.076 4 C -0.211 4.211 5 C -0.047 4.047 6 C -0.240 4.240 7 C 0.282 3.718 8 O -0.355 6.355 9 C -0.057 4.057 10 C -0.554 4.554 11 H 0.089 0.911 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.727 3.273 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.153 3.847 19 N -0.408 5.408 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.135 0.865 24 H 0.138 0.862 25 H 0.153 0.847 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.218 0.782 30 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -12.850 7.658 -0.368 14.964 hybrid contribution 0.352 -0.962 -0.031 1.025 sum -12.499 6.696 -0.399 14.185 Atomic orbital electron populations 1.20555 0.91537 1.02280 1.01471 1.19450 0.95652 0.92049 1.11862 1.20886 0.94228 0.96464 0.96000 1.20826 0.93886 0.97970 1.08450 1.21415 1.00475 0.90875 0.91945 1.20695 0.92130 0.96884 1.14304 1.23086 0.93633 0.85661 0.69376 1.90148 1.72107 1.34520 1.38752 1.19500 0.86896 0.99857 0.99410 1.21151 0.92168 0.92099 1.49971 0.91055 1.25001 0.96888 0.97395 0.95173 1.69949 1.02835 1.30625 1.50475 0.86532 0.77327 0.84669 0.78753 1.20190 1.21319 1.20188 1.17813 0.90189 0.86414 0.90316 1.42841 1.18435 1.09859 1.69709 0.92121 0.92147 0.91827 0.86482 0.86216 0.84682 0.92929 0.92881 0.92856 0.78235 0.75053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.44 36.01 0.34 -0.73 16 2 C -0.19 -2.61 5.89 -104.47 -0.62 -3.23 16 3 C -0.06 -0.75 9.67 -39.52 -0.38 -1.13 16 4 C -0.19 -2.71 10.02 -39.64 -0.40 -3.11 16 5 C -0.03 -0.48 9.46 -39.12 -0.37 -0.85 16 6 C -0.23 -4.51 5.88 -104.90 -0.62 -5.12 16 7 C 0.40 9.22 7.08 -30.91 -0.22 9.00 16 8 O -0.48 -11.60 12.93 5.53 0.07 -11.53 16 9 C -0.02 -0.52 4.14 -29.04 -0.12 -0.64 16 10 C -0.52 -14.99 8.92 -34.44 -0.31 -15.29 16 11 H 0.07 2.12 6.75 -52.49 -0.35 1.77 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 14 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 C 0.26 4.42 6.75 -83.57 -0.56 3.85 16 19 N -0.86 -13.32 8.08 32.58 0.26 -13.06 16 20 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.06 0.60 6.99 -51.93 -0.36 0.24 16 22 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 23 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 24 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 25 H 0.14 2.28 6.99 -52.49 -0.37 1.91 16 26 H 0.05 1.38 7.91 -51.93 -0.41 0.96 16 27 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.39 4.74 7.52 -40.82 -0.31 4.44 16 30 H 0.41 7.12 6.14 -40.82 -0.25 6.87 16 LS Contribution 258.96 15.07 3.90 3.90 Total: -1.00 -31.40 258.96 -6.70 -38.10 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -3.30 Total: 6.98 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -3.35 Total: -15.73 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 1.00 Total: -38.87 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.40 -6.70 -38.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260752546.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.922 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds