Wall clock time and date at job start Mon Mar 30 2020 20:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 H 1.08996 * 109.79062 * 299.20672 * 9 7 2 11 11 C 1.53427 * 109.79798 * 178.34298 * 9 7 2 12 12 C 1.52840 * 108.85681 * 177.23113 * 11 9 7 13 13 C 1.50608 * 110.49679 * 51.34687 * 12 11 9 14 14 C 1.38548 * 118.87364 * 159.54254 * 13 12 11 15 15 C 1.38024 * 120.38507 * 179.52292 * 14 13 12 16 16 C 1.38817 * 120.10159 * 0.03706 * 15 14 13 17 17 O 1.35897 * 120.10674 * 180.11009 * 16 15 14 18 18 C 1.38511 * 119.79281 * 0.08827 * 16 15 14 19 19 C 1.38666 * 121.47913 * 339.29177 * 13 12 11 20 20 N 1.39923 * 120.83298 * 0.57985 * 19 13 12 21 21 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.57246 * 297.03503 * 11 9 7 23 23 H 1.08996 * 109.57039 * 57.41023 * 11 9 7 24 24 H 1.08998 * 109.29953 * 291.02793 * 12 11 9 25 25 H 1.09002 * 109.29733 * 171.66321 * 12 11 9 26 26 H 1.07995 * 119.81148 * 359.50599 * 14 13 12 27 27 H 1.07995 * 119.95337 * 180.02562 * 15 14 13 28 28 H 0.96702 * 113.99867 * 269.98033 * 17 16 15 29 29 H 1.07999 * 120.00946 * 179.97438 * 18 16 15 30 30 H 0.97004 * 120.53775 * 166.37435 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.8803 -0.6942 -0.8957 11 6 4.0312 -2.6370 0.0425 12 6 5.5578 -2.6146 -0.0287 13 6 6.1203 -1.6762 1.0063 14 6 7.4412 -1.8249 1.3968 15 6 7.9915 -0.9760 2.3358 16 6 7.2222 0.0343 2.8966 17 8 7.7645 0.8717 3.8194 18 6 5.9002 0.1866 2.5123 19 6 5.3481 -0.6705 1.5677 20 7 4.0096 -0.5022 1.1965 21 1 -0.4849 0.8401 -0.0004 22 1 3.7160 -3.1115 0.9719 23 1 3.6341 -3.1933 -0.8066 24 1 5.8674 -2.2847 -1.0203 25 1 5.9415 -3.6192 0.1494 26 1 8.0438 -2.6098 0.9643 27 1 9.0220 -1.0979 2.6348 28 1 7.6707 0.5652 4.7318 29 1 5.2984 0.9712 2.9466 30 1 3.4199 0.0620 1.7209 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260791432.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:49 Heat of formation + Delta-G solvation = -17.053199 kcal Electronic energy + Delta-G solvation = -14621.586951 eV Core-core repulsion = 12188.524176 eV Total energy + Delta-G solvation = -2433.062775 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.66642 -37.57546 -35.09686 -32.67368 -32.48563 -29.60242 -28.58210 -25.81907 -23.23014 -22.06297 -21.64633 -19.14264 -17.81440 -17.08088 -16.27846 -15.26348 -15.25810 -14.46447 -14.13474 -13.84513 -13.08622 -12.90400 -12.81135 -12.57335 -12.44635 -11.76983 -11.40390 -11.03810 -10.70700 -10.37177 -10.20133 -10.01259 -9.97350 -9.40928 -9.01031 -8.80936 -8.09284 -6.54242 -6.33063 -4.40294 1.72481 2.08040 3.16083 3.27404 3.33120 4.12125 4.22013 4.30841 4.68991 5.14325 5.27516 5.46570 5.56494 5.75439 5.80543 5.97911 6.10537 6.25050 6.36157 6.49822 6.54204 6.67959 6.77352 6.92545 7.04414 7.13663 7.22676 7.33380 7.96289 8.18047 8.25280 8.70463 8.75283 9.26764 10.77987 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.033695 B = 0.010264 C = 0.008311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.777004 B = 2727.457046 C = 3368.302288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.077 3.923 3 Si 0.856 3.144 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.232 1.232 7 C -0.526 4.526 8 H 0.082 0.918 9 C 0.236 3.764 10 H 0.030 0.970 11 C -0.117 4.117 12 C -0.070 4.070 13 C -0.170 4.170 14 C -0.061 4.061 15 C -0.223 4.223 16 C 0.139 3.861 17 O -0.506 6.506 18 C -0.237 4.237 19 C 0.245 3.755 20 N -0.723 5.723 21 H 0.268 0.732 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.384 0.616 29 H 0.117 0.883 30 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.124 -2.043 4.148 12.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.129 4.129 3 Si 0.682 3.318 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.155 1.155 7 C -0.564 4.564 8 H 0.101 0.899 9 C 0.135 3.865 10 H 0.048 0.952 11 C -0.155 4.155 12 C -0.108 4.108 13 C -0.175 4.175 14 C -0.080 4.080 15 C -0.244 4.244 16 C 0.095 3.905 17 O -0.315 6.315 18 C -0.261 4.261 19 C 0.135 3.865 20 N -0.352 5.352 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.239 0.761 29 H 0.135 0.865 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 11.956 -1.692 3.451 12.559 hybrid contribution -0.065 0.984 0.668 1.191 sum 11.891 -0.708 4.119 12.604 Atomic orbital electron populations 1.69901 1.06436 1.27558 1.48078 1.25120 0.94832 0.99464 0.93449 0.87441 0.81729 0.82977 0.79647 1.20246 1.21383 1.15534 1.21157 0.88190 0.95062 1.52038 0.89948 1.19265 0.94664 0.88780 0.83762 0.95243 1.21742 0.93043 0.98786 1.01944 1.20344 0.96753 0.97042 0.96615 1.19360 0.94525 0.99234 1.04426 1.20620 0.93771 0.97806 0.95774 1.20834 1.00249 0.98936 1.04409 1.18103 0.90479 0.89815 0.92130 1.84773 1.80395 1.47901 1.18449 1.20845 0.95380 1.03429 1.06451 1.17770 0.86546 0.90887 0.91276 1.47228 1.06079 1.51616 1.30304 0.92198 0.92048 0.91350 0.91859 0.91872 0.86564 0.86785 0.76126 0.86453 0.76775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.64 13.96 55.43 0.77 -24.86 16 2 C 0.08 2.08 5.42 -17.82 -0.10 1.98 16 3 Si 0.86 19.99 26.20 -169.99 -4.45 15.54 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.23 -5.11 4.86 56.52 0.27 -4.84 16 7 C -0.53 -13.90 9.30 -34.44 -0.32 -14.22 16 8 H 0.08 2.36 8.00 -52.49 -0.42 1.94 16 9 C 0.24 5.33 2.25 -68.63 -0.15 5.18 16 10 H 0.03 0.69 7.62 -51.93 -0.40 0.30 16 11 C -0.12 -2.26 5.36 -26.59 -0.14 -2.40 16 12 C -0.07 -1.18 5.78 -28.01 -0.16 -1.34 16 13 C -0.17 -3.06 5.76 -104.39 -0.60 -3.66 16 14 C -0.06 -0.95 9.65 -39.55 -0.38 -1.33 16 15 C -0.22 -3.47 9.98 -39.45 -0.39 -3.86 16 16 C 0.14 2.32 6.70 -39.27 -0.26 2.06 16 17 O -0.51 -7.32 13.51 -19.42 -0.26 -7.58 16 18 C -0.24 -4.37 9.81 -39.20 -0.38 -4.76 16 19 C 0.24 4.84 6.47 -83.73 -0.54 4.30 16 20 N -0.72 -15.61 3.74 -52.78 -0.20 -15.80 16 21 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 22 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.91 8.12 -51.93 -0.42 0.48 16 26 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.38 3.56 9.06 45.56 0.41 3.97 16 29 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 30 H 0.39 8.63 5.99 -40.82 -0.24 8.38 16 LS Contribution 248.67 15.07 3.75 3.75 Total: -1.00 -29.62 248.67 -6.70 -36.32 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -2.87 Total: 10.70 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -3.44 Total: -18.05 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.58 Total: -40.67 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.26 Total: -7.58 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.45 Total: 15.54 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.62 -6.70 -36.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260791432.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.264 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds