Wall clock time and date at job start Mon Mar 30 2020 20:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 H 1.08996 * 109.79062 * 299.20672 * 9 7 2 11 11 C 1.53427 * 109.79798 * 178.34298 * 9 7 2 12 12 C 1.52840 * 108.85681 * 177.23113 * 11 9 7 13 13 C 1.50608 * 110.49679 * 51.34687 * 12 11 9 14 14 C 1.38548 * 118.87364 * 159.54254 * 13 12 11 15 15 C 1.38024 * 120.38507 * 179.52292 * 14 13 12 16 16 C 1.38817 * 120.10159 * 0.03706 * 15 14 13 17 17 O 1.35897 * 120.10674 * 180.11009 * 16 15 14 18 18 C 1.38511 * 119.79281 * 0.08827 * 16 15 14 19 19 C 1.38666 * 121.47913 * 339.29177 * 13 12 11 20 20 N 1.39923 * 120.83298 * 0.57985 * 19 13 12 21 21 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.57246 * 297.03503 * 11 9 7 23 23 H 1.08996 * 109.57039 * 57.41023 * 11 9 7 24 24 H 1.08998 * 109.29953 * 291.02793 * 12 11 9 25 25 H 1.09002 * 109.29733 * 171.66321 * 12 11 9 26 26 H 1.07995 * 119.81148 * 359.50599 * 14 13 12 27 27 H 1.07995 * 119.95337 * 180.02562 * 15 14 13 28 28 H 0.96702 * 113.99867 * 269.98033 * 17 16 15 29 29 H 1.07999 * 120.00946 * 179.97438 * 18 16 15 30 30 H 0.97004 * 120.53775 * 166.37435 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.8803 -0.6942 -0.8957 11 6 4.0312 -2.6370 0.0425 12 6 5.5578 -2.6146 -0.0287 13 6 6.1203 -1.6762 1.0063 14 6 7.4412 -1.8249 1.3968 15 6 7.9915 -0.9760 2.3358 16 6 7.2222 0.0343 2.8966 17 8 7.7645 0.8717 3.8194 18 6 5.9002 0.1866 2.5123 19 6 5.3481 -0.6705 1.5677 20 7 4.0096 -0.5022 1.1965 21 1 -0.4849 0.8401 -0.0004 22 1 3.7160 -3.1115 0.9719 23 1 3.6341 -3.1933 -0.8066 24 1 5.8674 -2.2847 -1.0203 25 1 5.9415 -3.6192 0.1494 26 1 8.0438 -2.6098 0.9643 27 1 9.0220 -1.0979 2.6348 28 1 7.6707 0.5652 4.7318 29 1 5.2984 0.9712 2.9466 30 1 3.4199 0.0620 1.7209 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260791432.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:49 Heat of formation + Delta-G solvation = -37.847110 kcal Electronic energy + Delta-G solvation = -14622.488642 eV Core-core repulsion = 12188.524176 eV Total energy + Delta-G solvation = -2433.964466 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.01821 -38.89259 -36.55008 -34.46809 -34.05831 -31.15910 -29.95473 -27.55650 -24.75372 -23.38389 -23.22088 -20.57003 -19.15848 -19.02837 -17.83378 -16.65339 -16.57797 -16.11858 -15.59436 -15.32855 -14.74518 -14.44102 -14.26041 -14.22413 -13.83636 -13.19238 -12.91698 -12.76537 -12.30108 -11.89498 -11.82536 -11.55579 -11.51594 -11.11423 -10.89731 -10.49904 -9.37804 -8.43535 -8.05638 -6.54826 0.44987 0.76627 1.28125 1.35806 1.46803 2.24454 2.64530 2.88442 3.14894 3.50708 3.99296 4.12270 4.28448 4.33573 4.50687 4.63513 4.71112 4.80607 5.01649 5.10037 5.12671 5.22890 5.42361 5.43225 5.51802 5.65127 5.73839 5.98279 6.14250 6.50448 6.74454 6.93438 7.07646 7.17399 8.71235 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.033695 B = 0.010264 C = 0.008311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.777004 B = 2727.457046 C = 3368.302288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.026 3.974 3 Si 0.923 3.077 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.212 1.212 7 C -0.530 4.530 8 H 0.045 0.955 9 C 0.242 3.758 10 H 0.023 0.977 11 C -0.113 4.113 12 C -0.064 4.064 13 C -0.184 4.184 14 C -0.053 4.053 15 C -0.214 4.214 16 C 0.140 3.860 17 O -0.511 6.511 18 C -0.252 4.252 19 C 0.217 3.783 20 N -0.739 5.739 21 H 0.269 0.731 22 H 0.048 0.952 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.152 0.848 27 H 0.143 0.857 28 H 0.408 0.592 29 H 0.113 0.887 30 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.627 -2.167 4.652 16.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.747 3.253 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.135 1.135 7 C -0.568 4.568 8 H 0.064 0.936 9 C 0.140 3.860 10 H 0.040 0.960 11 C -0.152 4.152 12 C -0.101 4.101 13 C -0.189 4.189 14 C -0.072 4.072 15 C -0.234 4.234 16 C 0.095 3.905 17 O -0.324 6.324 18 C -0.276 4.276 19 C 0.110 3.890 20 N -0.369 5.369 21 H 0.078 0.922 22 H 0.067 0.933 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.112 0.888 26 H 0.170 0.830 27 H 0.161 0.839 28 H 0.267 0.733 29 H 0.131 0.869 30 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 15.516 -1.839 3.990 16.126 hybrid contribution -1.050 0.945 0.605 1.537 sum 14.467 -0.894 4.596 15.205 Atomic orbital electron populations 1.70034 1.08205 1.28459 1.50429 1.25890 0.95406 1.02983 0.93172 0.86398 0.81207 0.78410 0.79281 1.20704 1.21589 1.13459 1.21376 0.90621 0.93606 1.51244 0.93635 1.19027 0.91954 0.90976 0.84069 0.95974 1.21671 0.95567 0.96482 1.01461 1.20325 0.94111 0.98661 0.96978 1.19650 0.95569 0.98995 1.04718 1.20986 0.92903 0.98292 0.95006 1.21220 1.01352 0.97663 1.03192 1.18196 0.89806 0.89994 0.92472 1.84713 1.79883 1.47921 1.19872 1.20955 0.96500 1.03522 1.06625 1.18000 0.85733 0.92421 0.92811 1.46741 1.07234 1.52613 1.30331 0.92159 0.93282 0.90986 0.90834 0.88787 0.83012 0.83914 0.73345 0.86920 0.77507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.96 21.45 0.30 -55.98 16 2 C 0.03 1.45 5.42 84.65 0.46 1.91 16 3 Si 0.92 42.52 26.20 68.60 1.80 44.32 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 6 H -0.21 -9.06 4.86 99.48 0.48 -8.57 16 7 C -0.53 -29.04 9.30 25.60 0.24 -28.81 16 8 H 0.05 2.75 8.00 -2.91 -0.02 2.73 16 9 C 0.24 10.97 2.25 44.31 0.10 11.07 16 10 H 0.02 1.04 7.62 -2.39 -0.02 1.03 16 11 C -0.11 -4.32 5.36 30.68 0.16 -4.15 16 12 C -0.06 -1.94 5.78 29.77 0.17 -1.77 16 13 C -0.18 -6.06 5.76 -19.72 -0.11 -6.18 16 14 C -0.05 -1.41 9.65 22.29 0.22 -1.20 16 15 C -0.21 -5.62 9.98 22.36 0.22 -5.39 16 16 C 0.14 4.19 6.70 22.47 0.15 4.34 16 17 O -0.51 -12.97 13.51 -92.39 -1.25 -14.21 16 18 C -0.25 -8.83 9.81 22.51 0.22 -8.61 16 19 C 0.22 8.22 6.47 38.13 0.25 8.47 16 20 N -0.74 -31.65 3.74 -320.90 -1.20 -32.85 16 21 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 22 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 23 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 24 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.09 2.29 8.12 -2.39 -0.02 2.27 16 26 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 27 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 28 H 0.41 6.06 9.06 -74.06 -0.67 5.39 16 29 H 0.11 3.93 8.06 -2.91 -0.02 3.91 16 30 H 0.39 17.09 5.99 -92.71 -0.55 16.53 16 Total: -1.00 -65.16 248.67 1.43 -63.73 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -0.29 Total: 25.32 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: 2.08 Total: -30.31 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -0.90 Total: -88.83 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -1.25 Total: -14.21 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.80 Total: 44.32 kcal Total: -65.16 1.43 -63.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260791432.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.879 kcal (2) G-P(sol) polarization free energy of solvation -65.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds