Wall clock time and date at job start Mon Mar 30 2020 20:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09010 * 109.60656 * 60.61978 * 9 7 2 11 11 C 1.53382 * 109.61131 * 181.12656 * 9 7 2 12 12 C 1.53023 * 107.95547 * 187.95871 * 11 9 7 13 13 C 1.50812 * 109.68334 * 312.62981 * 12 11 9 14 14 C 1.38772 * 118.09034 * 195.36503 * 13 12 11 15 15 C 1.37995 * 120.58372 * 180.65496 * 14 13 12 16 16 C 1.38330 * 119.92554 * 359.97438 * 15 14 13 17 17 C 1.38191 * 119.88471 * 359.86172 * 16 15 14 18 18 O 1.36010 * 119.83130 * 180.02562 * 17 16 15 19 19 C 1.38167 * 122.01849 * 15.76840 * 13 12 11 20 20 N 1.39704 * 122.95885 * 359.14013 * 19 13 12 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.76174 * 307.57803 * 11 9 7 23 23 H 1.08996 * 109.76525 * 68.34707 * 11 9 7 24 24 H 1.08993 * 109.43504 * 192.56622 * 12 11 9 25 25 H 1.08999 * 109.43790 * 72.69415 * 12 11 9 26 26 H 1.07998 * 119.70518 * 0.64268 * 14 13 12 27 27 H 1.08000 * 120.03649 * 179.97438 * 15 14 13 28 28 H 1.07997 * 120.05984 * 179.83617 * 16 15 14 29 29 H 0.96702 * 114.00490 * 270.02050 * 18 17 16 30 30 H 1.00899 * 110.99649 * 254.68447 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6281 -2.5658 -0.8866 11 6 2.2449 -3.6671 0.0319 12 6 1.4551 -4.9630 -0.1644 13 6 0.2538 -4.9687 0.7473 14 6 -0.4009 -6.1740 0.9580 15 6 -1.5137 -6.2357 1.7717 16 6 -1.9843 -5.0888 2.3854 17 6 -1.3366 -3.8848 2.1840 18 8 -1.8000 -2.7579 2.7883 19 6 -0.2063 -3.8190 1.3601 20 7 0.4082 -2.5745 1.2003 21 1 -0.4850 0.8400 0.0004 22 1 2.9705 -3.5520 -0.7734 23 1 2.7599 -3.6912 0.9922 24 1 2.0926 -5.8153 0.0704 25 1 1.1244 -5.0328 -1.2006 26 1 -0.0363 -7.0716 0.4807 27 1 -2.0166 -7.1784 1.9292 28 1 -2.8566 -5.1341 3.0205 29 1 -2.4514 -2.2706 2.2656 30 1 0.9283 -2.3195 2.0264 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260806795.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:50 Heat of formation + Delta-G solvation = -43.497280 kcal Electronic energy + Delta-G solvation = -14765.562761 eV Core-core repulsion = 12331.353285 eV Total energy + Delta-G solvation = -2434.209476 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.13130 -38.29821 -36.95836 -34.42475 -33.21440 -31.24097 -29.45120 -27.43720 -24.66544 -23.37654 -22.85814 -20.58291 -18.86762 -18.61567 -17.45258 -16.66019 -16.39441 -16.04478 -15.42567 -15.24801 -14.68353 -14.34077 -13.93096 -13.71823 -13.59620 -12.83832 -12.68888 -12.55306 -12.35381 -12.22005 -12.18631 -11.59032 -11.34879 -10.83393 -10.58552 -10.01509 -9.36384 -8.32833 -8.03759 -6.27411 0.46085 0.60765 1.42083 1.43776 1.52967 2.43359 2.80855 3.13397 3.58034 3.72071 3.98276 4.14329 4.30666 4.36482 4.50606 4.62227 4.73143 4.87193 5.06255 5.07218 5.13336 5.28891 5.52243 5.56476 5.61339 5.70701 5.78819 6.06269 6.10356 6.61512 6.87039 6.94436 7.21058 7.46312 8.98625 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.038650 B = 0.009638 C = 0.007990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.276804 B = 2904.486527 C = 3503.676106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.034 3.966 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.560 4.560 8 H 0.057 0.943 9 C 0.222 3.778 10 H 0.003 0.997 11 C -0.140 4.140 12 C -0.070 4.070 13 C -0.145 4.145 14 C -0.109 4.109 15 C -0.136 4.136 16 C -0.137 4.137 17 C 0.058 3.942 18 O -0.504 6.504 19 C 0.082 3.918 20 N -0.608 5.608 21 H 0.257 0.743 22 H 0.067 0.933 23 H 0.048 0.952 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.146 0.854 27 H 0.156 0.844 28 H 0.142 0.858 29 H 0.392 0.608 30 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.840 -10.737 2.117 11.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.170 4.170 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.599 4.599 8 H 0.076 0.924 9 C 0.116 3.884 10 H 0.021 0.979 11 C -0.179 4.179 12 C -0.107 4.107 13 C -0.149 4.149 14 C -0.128 4.128 15 C -0.154 4.154 16 C -0.156 4.156 17 C 0.011 3.989 18 O -0.314 6.314 19 C -0.020 4.020 20 N -0.234 5.234 21 H 0.066 0.934 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.112 0.888 25 H 0.089 0.911 26 H 0.164 0.836 27 H 0.174 0.826 28 H 0.160 0.840 29 H 0.249 0.751 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.103 -10.423 2.267 10.872 hybrid contribution 0.594 1.119 -0.208 1.284 sum -1.509 -9.304 2.059 9.647 Atomic orbital electron populations 1.70219 1.07119 1.26669 1.47390 1.25756 0.95497 1.02134 0.93653 0.85675 0.78771 0.79656 0.78103 1.20152 1.21178 1.19375 1.21364 0.92786 0.91387 1.54343 0.92443 1.18992 0.88769 0.92835 0.87845 0.97871 1.22163 0.98749 0.96040 1.00974 1.20516 0.93874 0.98359 0.97924 1.20238 0.98884 0.92679 1.03124 1.21261 0.95918 0.96752 0.98843 1.21140 0.97528 0.98546 0.98225 1.21426 1.00795 0.91969 1.01415 1.18724 0.94384 0.87497 0.98275 1.84677 1.63276 1.37745 1.45749 1.19738 0.96456 0.89476 0.96286 1.56932 1.37584 1.22420 1.06491 0.93376 0.91439 0.93310 0.88805 0.91114 0.83594 0.82636 0.84029 0.75150 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.09 12.77 21.45 0.27 -50.81 16 2 C 0.03 1.88 5.39 84.65 0.46 2.33 16 3 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.56 -30.74 8.61 25.60 0.22 -30.52 16 8 H 0.06 3.08 7.75 -2.91 -0.02 3.05 16 9 C 0.22 11.30 2.36 44.39 0.10 11.41 16 10 H 0.00 0.19 8.11 -2.38 -0.02 0.17 16 11 C -0.14 -5.75 5.42 30.73 0.17 -5.58 16 12 C -0.07 -2.40 5.81 29.89 0.17 -2.22 16 13 C -0.15 -5.36 5.74 -19.72 -0.11 -5.48 16 14 C -0.11 -3.18 9.63 22.34 0.22 -2.96 16 15 C -0.14 -3.62 10.05 22.23 0.22 -3.40 16 16 C -0.14 -4.26 9.97 22.28 0.22 -4.04 16 17 C 0.06 2.28 6.72 22.69 0.15 2.43 16 18 O -0.50 -20.12 13.12 -93.66 -1.23 -21.34 16 19 C 0.08 3.51 6.14 38.30 0.24 3.75 16 20 N -0.61 -30.08 5.16 -321.68 -1.66 -31.74 16 21 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 22 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 23 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 27 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 28 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 29 H 0.39 13.70 9.07 -74.06 -0.67 13.03 16 30 H 0.34 17.25 8.63 -89.69 -0.77 16.47 16 Total: -1.00 -63.45 256.33 1.18 -62.27 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -0.29 Total: 30.40 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 2.06 Total: -34.28 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -1.39 Total: -82.55 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -1.23 Total: -21.34 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -63.45 1.18 -62.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260806795.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.775 kcal (2) G-P(sol) polarization free energy of solvation -63.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds