Wall clock time and date at job start Mon Mar 30 2020 20:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00212 * 2 1 4 4 H 1.48500 * 109.47113 * 264.60903 * 3 2 1 5 5 H 1.48509 * 109.46892 * 24.61162 * 3 2 1 6 6 H 1.48504 * 109.47337 * 144.60826 * 3 2 1 7 7 C 1.37883 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99937 * 8.36927 * 7 2 1 9 9 C 1.50704 * 119.99873 * 188.37347 * 7 2 1 10 10 O 1.42901 * 109.22717 * 55.47743 * 9 7 2 11 11 C 1.52771 * 109.25522 * 296.01227 * 9 7 2 12 12 C 1.53319 * 108.36499 * 188.81270 * 11 9 7 13 13 C 1.52712 * 108.45661 * 69.78249 * 12 11 9 14 14 C 1.50720 * 110.58230 * 308.67381 * 13 12 11 15 15 N 1.32701 * 117.57152 * 197.81649 * 14 13 12 16 16 C 1.31509 * 122.39653 * 180.65706 * 15 14 13 17 17 C 1.38236 * 120.61561 * 359.97438 * 16 15 14 18 18 C 1.38416 * 118.84410 * 359.86326 * 17 16 15 19 19 C 1.37603 * 122.32777 * 18.18010 * 14 13 12 20 20 H 0.96997 * 120.00076 * 0.02562 * 1 2 3 21 21 H 0.96699 * 114.00087 * 59.46441 * 10 9 7 22 22 H 1.09004 * 109.68464 * 69.09757 * 11 9 7 23 23 H 1.08995 * 109.72155 * 308.54953 * 11 9 7 24 24 H 1.09003 * 109.64019 * 310.09834 * 12 11 9 25 25 H 1.08999 * 109.64330 * 189.47632 * 12 11 9 26 26 H 1.08999 * 109.25704 * 188.38375 * 13 12 11 27 27 H 1.09006 * 109.22290 * 68.93149 * 13 12 11 28 28 H 1.08003 * 119.69481 * 179.97438 * 16 15 14 29 29 H 1.08002 * 120.58611 * 179.88489 * 17 16 15 30 30 H 1.07993 * 120.57146 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6106 1.9806 -1.3939 5 1 1.3942 2.6829 0.5831 6 1 3.4851 1.4757 0.8109 7 6 2.0045 -1.1941 0.0005 8 1 1.4731 -2.1245 -0.1352 9 6 3.4995 -1.2010 0.1906 10 8 3.8226 -0.5209 1.4052 11 6 4.1598 -0.4786 -0.9825 12 6 5.6757 -0.6874 -0.8868 13 6 5.9825 -2.1512 -1.1952 14 6 5.1277 -3.0610 -0.3507 15 7 5.5116 -4.3254 -0.2281 16 6 4.8304 -5.2035 0.4750 17 6 3.6675 -4.8351 1.1253 18 6 3.2334 -3.5246 1.0260 19 6 3.9826 -2.6238 0.2746 20 1 -0.4850 0.8400 -0.0004 21 1 3.4239 -0.9135 2.1938 22 1 3.9320 0.5862 -0.9332 23 1 3.7911 -0.8898 -1.9222 24 1 6.0159 -0.4461 0.1202 25 1 6.1801 -0.0470 -1.6104 26 1 7.0338 -2.3498 -0.9866 27 1 5.7821 -2.3457 -2.2489 28 1 5.1828 -6.2220 0.5451 29 1 3.1074 -5.5571 1.7010 30 1 2.3289 -3.2064 1.5230 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260951132.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:13 Heat of formation + Delta-G solvation = -13.919661 kcal Electronic energy + Delta-G solvation = -15183.461791 eV Core-core repulsion = 12750.534896 eV Total energy + Delta-G solvation = -2432.926894 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.14217 -37.05788 -34.36820 -32.42325 -31.85875 -29.95164 -28.77506 -25.15678 -23.31903 -22.76842 -20.92078 -19.15462 -17.51402 -16.21769 -15.86067 -15.36327 -14.83276 -14.27055 -13.75198 -13.40567 -13.10298 -12.87476 -12.39717 -12.10244 -11.87982 -11.76433 -11.55797 -11.17649 -10.68516 -10.38009 -10.08509 -9.80717 -9.19867 -9.08618 -8.92057 -8.66167 -8.25667 -8.18908 -6.23476 -4.33741 1.66423 1.88106 3.31628 3.43790 3.62953 4.30725 4.43258 4.70383 5.09496 5.19779 5.41205 5.47060 5.58225 5.61722 5.64923 5.75912 5.90428 6.15525 6.20788 6.32307 6.35760 6.41594 6.67172 6.71487 6.81445 6.99220 7.28852 7.31648 7.50220 8.18185 8.49283 8.70418 8.89917 9.40990 10.86566 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.035589 B = 0.012747 C = 0.010329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.566059 B = 2196.127203 C = 2710.225186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.089 3.911 3 Si 0.878 3.122 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.222 1.222 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.260 3.740 10 O -0.568 6.568 11 C -0.108 4.108 12 C -0.122 4.122 13 C -0.061 4.061 14 C 0.126 3.874 15 N -0.501 5.501 16 C 0.086 3.914 17 C -0.191 4.191 18 C -0.055 4.055 19 C -0.111 4.111 20 H 0.267 0.733 21 H 0.360 0.640 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.145 0.855 29 H 0.126 0.874 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.505 -4.458 0.987 9.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.116 4.116 3 Si 0.707 3.293 4 H -0.213 1.213 5 H -0.233 1.233 6 H -0.145 1.145 7 C -0.595 4.595 8 H 0.095 0.905 9 C 0.220 3.780 10 O -0.374 6.374 11 C -0.145 4.145 12 C -0.160 4.160 13 C -0.099 4.099 14 C -0.009 4.009 15 N -0.211 5.211 16 C -0.074 4.074 17 C -0.211 4.211 18 C -0.081 4.081 19 C -0.113 4.113 20 H 0.076 0.924 21 H 0.207 0.793 22 H 0.079 0.921 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.163 0.837 29 H 0.144 0.856 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.448 -4.245 0.155 10.359 hybrid contribution -1.050 0.545 0.673 1.361 sum 8.398 -3.700 0.828 9.215 Atomic orbital electron populations 1.69939 1.06724 1.27687 1.47801 1.24959 0.94568 0.99756 0.92359 0.87080 0.81828 0.81864 0.78525 1.21346 1.23264 1.14541 1.21424 0.89359 0.95282 1.53402 0.90463 1.17827 0.94069 0.82896 0.83175 1.86615 1.76496 1.57389 1.16940 1.21870 0.93278 1.00546 0.98784 1.21638 0.97753 0.94545 1.02085 1.20290 0.98184 0.93162 0.98285 1.21048 0.93139 0.90719 0.95980 1.67439 1.33318 1.02749 1.17566 1.22425 0.92389 0.98423 0.94124 1.22073 0.98794 0.97373 1.02866 1.21844 0.98529 0.92197 0.95542 1.21368 0.93897 0.99532 0.96497 0.92359 0.79319 0.92055 0.90802 0.91097 0.92016 0.90671 0.90495 0.83730 0.85606 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.96 55.43 0.77 -25.22 16 2 C 0.09 2.45 5.45 -17.82 -0.10 2.36 16 3 Si 0.88 21.40 23.76 -169.99 -4.04 17.37 16 4 H -0.29 -6.88 6.98 56.52 0.39 -6.49 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.22 -5.27 5.39 56.52 0.30 -4.97 16 7 C -0.56 -14.72 7.89 -34.44 -0.27 -14.99 16 8 H 0.08 2.21 7.11 -52.49 -0.37 1.84 16 9 C 0.26 5.87 0.48 -93.14 -0.04 5.83 16 10 O -0.57 -12.56 9.38 -35.23 -0.33 -12.89 16 11 C -0.11 -2.29 4.28 -26.68 -0.11 -2.41 16 12 C -0.12 -2.16 5.95 -26.71 -0.16 -2.32 16 13 C -0.06 -1.04 5.92 -28.02 -0.17 -1.21 16 14 C 0.13 2.46 6.62 -82.44 -0.55 1.91 16 15 N -0.50 -9.33 10.19 -9.51 -0.10 -9.42 16 16 C 0.09 1.40 11.19 -17.69 -0.20 1.20 16 17 C -0.19 -3.11 10.12 -39.52 -0.40 -3.51 16 18 C -0.06 -1.06 8.74 -39.16 -0.34 -1.40 16 19 C -0.11 -2.30 5.00 -104.60 -0.52 -2.83 16 20 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 21 H 0.36 7.11 8.95 45.56 0.41 7.52 16 22 H 0.06 1.37 3.51 -51.93 -0.18 1.19 16 23 H 0.07 1.57 8.08 -51.93 -0.42 1.15 16 24 H 0.07 1.30 7.66 -51.93 -0.40 0.90 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.15 1.83 8.06 -52.48 -0.42 1.40 16 29 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.14 2.76 7.16 -52.49 -0.38 2.38 16 LS Contribution 239.74 15.07 3.61 3.61 Total: -1.00 -30.20 239.74 -5.64 -35.83 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -2.69 Total: 8.10 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -2.86 Total: -17.37 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.68 Total: -34.65 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.33 Total: -12.89 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.04 Total: 17.37 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.20 -5.64 -35.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260951132.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.911 kcal (2) G-P(sol) polarization free energy of solvation -30.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds