Wall clock time and date at job start Mon Mar 30 2020 20:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99558 * 2 1 4 4 H 1.48497 * 109.47080 * 270.00235 * 3 2 1 5 5 H 1.48495 * 109.47158 * 30.00320 * 3 2 1 6 6 H 1.48504 * 109.47021 * 150.00635 * 3 2 1 7 7 C 1.37876 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00126 * 186.84912 * 7 2 1 9 9 C 1.50699 * 119.99690 * 6.84517 * 7 2 1 10 10 O 1.42902 * 109.25740 * 304.38505 * 9 7 2 11 11 C 1.52765 * 109.25831 * 63.83571 * 9 7 2 12 12 C 1.53321 * 108.37418 * 171.16688 * 11 9 7 13 13 C 1.52732 * 108.44508 * 290.21157 * 12 11 9 14 14 C 1.50726 * 110.57376 * 51.35793 * 13 12 11 15 15 N 1.32691 * 117.57735 * 162.14087 * 14 13 12 16 16 C 1.31509 * 122.40053 * 179.35401 * 15 14 13 17 17 C 1.38246 * 120.61395 * 359.97438 * 16 15 14 18 18 C 1.38412 * 118.83921 * 0.15317 * 17 16 15 19 19 C 1.37605 * 122.32381 * 341.77837 * 14 13 12 20 20 H 0.96992 * 120.00363 * 359.97438 * 1 2 3 21 21 H 0.96699 * 113.99977 * 300.52206 * 10 9 7 22 22 H 1.09006 * 109.67879 * 290.87921 * 11 9 7 23 23 H 1.08995 * 109.68539 * 51.40317 * 11 9 7 24 24 H 1.08998 * 109.63845 * 49.89373 * 12 11 9 25 25 H 1.08995 * 109.64071 * 170.31502 * 12 11 9 26 26 H 1.08998 * 109.25543 * 291.07171 * 13 12 11 27 27 H 1.09003 * 109.25165 * 171.63600 * 13 12 11 28 28 H 1.08001 * 119.69762 * 180.02562 * 16 15 14 29 29 H 1.07996 * 120.57976 * 180.17372 * 17 16 15 30 30 H 1.07994 * 120.56440 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5468 1.4403 0.6999 7 6 2.0047 -1.1940 -0.0005 8 1 3.0788 -1.1973 0.1110 9 6 1.2592 -2.4944 -0.1567 10 8 0.2537 -2.5856 0.8546 11 6 0.5948 -2.5323 -1.5317 12 6 0.0330 -3.9408 -1.7583 13 6 1.2038 -4.9048 -1.9389 14 6 2.1933 -4.7533 -0.8121 15 7 3.0601 -5.7392 -0.6190 16 6 3.9720 -5.7005 0.3278 17 6 4.0636 -4.6102 1.1729 18 6 3.1763 -3.5608 1.0073 19 6 2.2228 -3.6403 -0.0034 20 1 -0.4850 0.8399 0.0004 21 1 0.5994 -2.5516 1.7571 22 1 -0.2151 -1.8037 -1.5683 23 1 1.3311 -2.3018 -2.3017 24 1 -0.5598 -4.2420 -0.8946 25 1 -0.5916 -3.9467 -2.6515 26 1 1.7013 -4.6928 -2.8852 27 1 0.8281 -5.9280 -1.9522 28 1 4.6563 -6.5277 0.4458 29 1 4.8144 -4.5777 1.9484 30 1 3.2231 -2.6953 1.6515 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260951133.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:15 Heat of formation + Delta-G solvation = -23.956359 kcal Electronic energy + Delta-G solvation = -15100.126002 eV Core-core repulsion = 12666.763884 eV Total energy + Delta-G solvation = -2433.362118 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.95805 -36.65431 -34.08683 -32.22412 -31.71416 -29.71900 -28.20816 -25.14607 -23.18155 -22.46085 -20.98840 -18.80518 -17.08631 -16.11720 -15.63607 -15.21918 -14.65143 -14.09163 -13.55873 -13.26700 -13.02397 -12.42951 -12.19852 -11.94958 -11.59200 -11.42446 -11.07716 -11.02531 -10.61948 -10.23372 -10.11038 -9.85788 -9.15756 -8.99077 -8.85580 -8.58136 -8.15967 -8.06322 -6.05780 -4.25620 1.76512 1.97437 3.22719 3.30708 3.32569 4.30626 4.43093 4.82839 5.17053 5.34984 5.54769 5.67433 5.76919 5.83167 5.86849 6.00735 6.16314 6.34279 6.43510 6.51666 6.61163 6.68561 6.87657 6.93252 7.26091 7.34626 7.55890 7.71033 7.82514 8.11895 8.59067 8.72520 9.29370 9.50544 10.93959 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032558 B = 0.011692 C = 0.009674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.789607 B = 2394.200787 C = 2893.625289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.084 3.916 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.566 4.566 8 H 0.058 0.942 9 C 0.291 3.709 10 O -0.546 6.546 11 C -0.090 4.090 12 C -0.122 4.122 13 C -0.062 4.062 14 C 0.125 3.875 15 N -0.502 5.502 16 C 0.081 3.919 17 C -0.193 4.193 18 C -0.062 4.062 19 C -0.115 4.115 20 H 0.260 0.740 21 H 0.348 0.652 22 H 0.089 0.911 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.143 0.857 29 H 0.123 0.877 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -6.072 0.155 7.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.123 4.123 3 Si 0.713 3.287 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.604 4.604 8 H 0.076 0.924 9 C 0.251 3.749 10 O -0.348 6.348 11 C -0.128 4.128 12 C -0.160 4.160 13 C -0.099 4.099 14 C -0.009 4.009 15 N -0.212 5.212 16 C -0.078 4.078 17 C -0.213 4.213 18 C -0.088 4.088 19 C -0.117 4.117 20 H 0.070 0.930 21 H 0.191 0.809 22 H 0.107 0.893 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.161 0.839 29 H 0.141 0.859 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.038 -6.718 -0.934 7.432 hybrid contribution 1.215 1.724 1.106 2.381 sum 4.253 -4.995 0.172 6.563 Atomic orbital electron populations 1.70113 1.05665 1.26276 1.46125 1.24989 0.94704 0.98817 0.93783 0.86723 0.80033 0.83654 0.78324 1.20466 1.21140 1.19893 1.21592 0.93632 0.90761 1.54421 0.92389 1.17482 0.83118 0.87416 0.86884 1.86555 1.36129 1.96228 1.15930 1.21416 1.00866 0.94677 0.95845 1.21666 0.96308 0.96873 1.01178 1.20317 0.94425 1.00193 0.95000 1.21104 0.94279 0.89340 0.96203 1.67425 1.04554 1.29280 1.19908 1.22382 0.96165 0.97298 0.91966 1.22047 1.01428 0.96043 1.01804 1.21803 0.92705 0.97433 0.96835 1.21868 0.98080 0.97268 0.94489 0.92994 0.80854 0.89294 0.92858 0.91479 0.92574 0.90859 0.91129 0.83932 0.85870 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.14 11.20 55.43 0.62 -22.52 16 2 C 0.08 2.20 5.21 -17.82 -0.09 2.11 16 3 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.57 -14.61 7.28 -34.44 -0.25 -14.86 16 8 H 0.06 1.50 6.87 -52.49 -0.36 1.14 16 9 C 0.29 6.96 0.51 -93.14 -0.05 6.91 16 10 O -0.55 -13.51 11.39 -35.23 -0.40 -13.91 16 11 C -0.09 -2.08 4.64 -26.69 -0.12 -2.21 16 12 C -0.12 -2.38 5.95 -26.70 -0.16 -2.54 16 13 C -0.06 -1.13 5.92 -28.01 -0.17 -1.30 16 14 C 0.13 2.58 6.62 -82.44 -0.55 2.04 16 15 N -0.50 -9.79 10.19 -9.51 -0.10 -9.89 16 16 C 0.08 1.38 11.19 -17.69 -0.20 1.18 16 17 C -0.19 -3.23 10.12 -39.51 -0.40 -3.63 16 18 C -0.06 -1.21 8.74 -39.17 -0.34 -1.56 16 19 C -0.11 -2.50 5.00 -104.60 -0.52 -3.02 16 20 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 21 H 0.35 7.85 8.96 45.56 0.41 8.26 16 22 H 0.09 2.27 6.89 -51.93 -0.36 1.91 16 23 H 0.05 1.22 8.08 -51.93 -0.42 0.80 16 24 H 0.07 1.38 7.66 -51.93 -0.40 0.98 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.14 2.66 7.16 -52.49 -0.38 2.28 16 LS Contribution 249.30 15.07 3.76 3.76 Total: -1.00 -28.71 249.30 -6.74 -35.45 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -2.75 Total: 8.72 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -2.85 Total: -16.87 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.52 Total: -32.41 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.40 Total: -13.91 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.71 -6.74 -35.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260951133.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.495 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds