Wall clock time and date at job start Mon Mar 30 2020 20:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48500 * 109.47145 * 269.99904 * 3 2 1 5 5 H 1.48501 * 109.46967 * 30.00206 * 3 2 1 6 6 H 1.48502 * 109.47063 * 149.99918 * 3 2 1 7 7 C 1.37875 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00298 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99878 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47316 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.38090 * 55.92989 * 10 9 7 12 12 C 1.53757 * 110.42491 * 293.55255 * 10 9 7 13 13 N 1.46534 * 105.16546 * 241.23629 * 12 10 9 14 14 C 1.39592 * 110.08798 * 359.97438 * 13 12 10 15 15 C 1.39722 * 129.28883 * 180.02562 * 14 13 12 16 16 C 1.37862 * 120.40335 * 179.97438 * 15 14 13 17 17 C 1.38208 * 120.28693 * 359.97438 * 16 15 14 18 18 C 1.38741 * 119.77063 * 0.04527 * 17 16 15 19 19 O 1.35897 * 119.98288 * 179.97438 * 18 17 16 20 20 C 1.38501 * 111.65060 * 359.97438 * 14 13 12 21 21 H 0.97004 * 119.99831 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46680 * 60.00441 * 9 7 2 23 23 H 1.08998 * 109.47490 * 300.00645 * 9 7 2 24 24 H 1.09005 * 110.30439 * 0.15562 * 12 10 9 25 25 H 1.09003 * 110.30832 * 122.31462 * 12 10 9 26 26 H 0.97002 * 124.95766 * 179.97438 * 13 12 10 27 27 H 1.08001 * 119.80088 * 359.97438 * 15 14 13 28 28 H 1.07995 * 119.85651 * 179.97438 * 16 15 14 29 29 H 1.07997 * 120.11668 * 180.02562 * 17 16 15 30 30 H 0.96700 * 113.99849 * 269.97668 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 1 3.6080 -3.1854 -0.8460 12 6 3.6580 -3.3341 1.3212 13 7 4.9411 -3.6987 1.9278 14 6 5.9931 -3.2908 1.1060 15 6 7.3701 -3.4348 1.2944 16 6 8.2568 -2.9579 0.3525 17 6 7.7918 -2.3325 -0.7889 18 6 6.4264 -2.1840 -0.9854 19 8 5.9645 -1.5692 -2.1059 20 6 5.5328 -2.6633 -0.0397 21 1 -0.4850 0.8401 0.0004 22 1 3.8751 -0.6797 0.8896 23 1 3.8745 -0.6808 -0.8904 24 1 3.1126 -2.6507 1.9722 25 1 3.0643 -4.2272 1.1266 26 1 5.0444 -4.1568 2.7766 27 1 7.7421 -3.9226 2.1832 28 1 9.3193 -3.0736 0.5073 29 1 8.4888 -1.9603 -1.5251 30 1 5.8551 -0.6129 -2.0131 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260952842.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:16 Heat of formation + Delta-G solvation = -39.033405 kcal Electronic energy + Delta-G solvation = -14580.669452 eV Core-core repulsion = 12146.653544 eV Total energy + Delta-G solvation = -2434.015908 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.48081 -38.58191 -36.83103 -35.13445 -33.25850 -30.56173 -30.03485 -28.09595 -24.65621 -23.51588 -22.61032 -21.24692 -19.32663 -18.96033 -17.46476 -16.64899 -16.48822 -16.35219 -15.91208 -15.28106 -15.07224 -14.71195 -14.23383 -13.69192 -13.19340 -13.13207 -12.95383 -12.88366 -12.44181 -12.08265 -11.85649 -11.61067 -11.54948 -11.14454 -10.90964 -10.75336 -9.40065 -8.28473 -8.23765 -6.31689 0.44929 0.68225 1.35058 1.36913 1.48149 2.36027 2.54674 2.84473 3.06904 3.46454 3.82694 3.89836 4.25685 4.28908 4.46619 4.60737 4.68423 4.79765 4.91970 5.02164 5.10616 5.24649 5.40799 5.49983 5.61578 5.66947 5.71105 5.75954 6.19287 6.28137 6.74665 6.91253 7.07690 7.32407 8.87962 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.033928 B = 0.009499 C = 0.008224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.073802 B = 2946.895960 C = 3403.662337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.251 1.251 7 C -0.524 4.524 8 H 0.038 0.962 9 C 0.014 3.986 10 C -0.032 4.032 11 H 0.060 0.940 12 C 0.131 3.869 13 N -0.736 5.736 14 C 0.197 3.803 15 C -0.196 4.196 16 C -0.057 4.057 17 C -0.208 4.208 18 C 0.144 3.856 19 O -0.513 6.513 20 C -0.219 4.219 21 H 0.266 0.734 22 H 0.012 0.988 23 H 0.020 0.980 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.422 0.578 27 H 0.144 0.856 28 H 0.162 0.838 29 H 0.144 0.856 30 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.062 -4.184 2.863 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.175 1.175 7 C -0.562 4.562 8 H 0.057 0.943 9 C -0.024 4.024 10 C -0.051 4.051 11 H 0.078 0.922 12 C 0.007 3.993 13 N -0.369 5.369 14 C 0.092 3.908 15 C -0.219 4.219 16 C -0.075 4.075 17 C -0.228 4.228 18 C 0.099 3.901 19 O -0.325 6.325 20 C -0.224 4.224 21 H 0.074 0.926 22 H 0.030 0.970 23 H 0.038 0.962 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.262 0.738 27 H 0.162 0.838 28 H 0.180 0.820 29 H 0.161 0.839 30 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 16.728 -4.652 2.662 17.566 hybrid contribution -0.680 1.026 0.337 1.276 sum 16.048 -3.626 2.999 16.724 Atomic orbital electron populations 1.70058 1.08163 1.28045 1.52698 1.25931 0.95537 1.03246 0.94243 0.85725 0.79402 0.78654 0.79291 1.18860 1.21120 1.17505 1.21386 0.91426 0.93279 1.50075 0.94332 1.19403 0.94027 0.92828 0.96094 1.20316 0.90417 0.97649 0.96736 0.92198 1.21702 0.85529 0.98340 0.93771 1.44755 1.03115 1.65262 1.23803 1.18526 0.90176 0.92413 0.89656 1.20654 0.88920 1.08939 1.03343 1.20990 1.00586 0.94334 0.91620 1.21307 0.93107 1.07574 1.00840 1.18113 0.91172 0.95900 0.84956 1.84700 1.87757 1.26524 1.33504 1.20541 0.95656 1.08894 0.97335 0.92553 0.96968 0.96198 0.91957 0.91684 0.73846 0.83833 0.82008 0.83852 0.74145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 2 C 0.01 0.43 5.47 84.65 0.46 0.89 16 3 Si 0.95 44.14 27.47 68.60 1.88 46.03 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 7 C -0.52 -29.90 8.98 25.60 0.23 -29.67 16 8 H 0.04 2.40 7.93 -2.91 -0.02 2.38 16 9 C 0.01 0.67 3.40 29.85 0.10 0.77 16 10 C -0.03 -1.36 2.97 -11.12 -0.03 -1.40 16 11 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 12 C 0.13 4.91 7.22 86.63 0.63 5.53 16 13 N -0.74 -22.39 6.53 -337.79 -2.21 -24.60 16 14 C 0.20 6.30 7.03 38.33 0.27 6.57 16 15 C -0.20 -4.88 10.07 22.54 0.23 -4.65 16 16 C -0.06 -1.27 10.01 22.17 0.22 -1.05 16 17 C -0.21 -5.51 10.00 22.38 0.22 -5.29 16 18 C 0.14 4.84 6.70 22.49 0.15 4.99 16 19 O -0.51 -17.28 12.95 -92.39 -1.20 -18.47 16 20 C -0.22 -8.12 5.51 -19.54 -0.11 -8.23 16 21 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 22 H 0.01 0.58 7.20 -2.38 -0.02 0.57 16 23 H 0.02 0.92 6.68 -2.39 -0.02 0.91 16 24 H 0.06 2.55 7.41 -2.38 -0.02 2.54 16 25 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.42 9.83 8.96 -92.71 -0.83 9.00 16 27 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 28 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 29 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.40 10.74 8.71 -74.06 -0.64 10.10 16 Total: -1.00 -68.91 254.66 0.79 -68.12 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -0.36 Total: 19.38 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 2.37 Total: -31.54 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -1.91 Total: -83.52 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.20 Total: -18.47 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.03 kcal Total: -68.91 0.79 -68.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260952842.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.083 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds