Wall clock time and date at job start Mon Mar 30 2020 20:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00121 * 2 1 4 4 H 1.48502 * 109.47093 * 269.99841 * 3 2 1 5 5 H 1.48501 * 109.47017 * 29.99278 * 3 2 1 6 6 H 1.48494 * 109.47383 * 149.99515 * 3 2 1 7 7 C 1.37874 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99967 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99824 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46856 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.26715 * 307.06865 * 10 9 7 12 12 C 1.53756 * 110.30040 * 185.00182 * 10 9 7 13 13 C 1.51208 * 104.52676 * 240.97488 * 12 10 9 14 14 C 1.38543 * 108.56559 * 359.97438 * 13 12 10 15 15 C 1.39684 * 119.06122 * 179.97438 * 14 13 12 16 16 C 1.37896 * 120.40210 * 359.97438 * 15 14 13 17 17 C 1.38177 * 120.28958 * 359.86180 * 16 15 14 18 18 C 1.38613 * 130.99574 * 180.02562 * 13 12 10 19 19 O 1.35905 * 119.97789 * 359.94620 * 18 13 12 20 20 N 1.39587 * 111.64175 * 0.02562 * 14 13 12 21 21 H 0.96996 * 119.99960 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47035 * 60.00155 * 9 7 2 23 23 H 1.09004 * 109.47051 * 300.00012 * 9 7 2 24 24 H 1.09002 * 110.42483 * 122.21566 * 12 10 9 25 25 H 1.08998 * 110.52686 * 359.78460 * 12 10 9 26 26 H 1.08005 * 119.79490 * 180.02562 * 15 14 13 27 27 H 1.07991 * 119.85515 * 179.97438 * 16 15 14 28 28 H 1.07995 * 120.11626 * 180.22080 * 17 16 15 29 29 H 0.96705 * 113.99576 * 90.00444 * 19 18 13 30 30 H 0.96994 * 124.95339 * 179.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 1 2.9592 -3.5491 -0.8133 12 6 1.5001 -5.0011 -0.1218 13 6 1.8509 -5.7495 1.1444 14 6 2.6902 -4.9549 1.9083 15 6 3.1512 -5.4383 3.1351 16 6 2.7749 -6.6887 3.5784 17 6 1.9349 -7.4755 2.8139 18 6 1.4756 -7.0069 1.5911 19 8 0.6519 -7.7786 0.8340 20 7 2.9481 -3.7320 1.2866 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5563 0.8920 24 1 1.8480 -5.5501 -0.9969 25 1 0.4244 -4.8359 -0.1802 26 1 3.8057 -4.8286 3.7405 27 1 3.1369 -7.0537 4.5281 28 1 1.6392 -8.4529 3.1655 29 1 1.1155 -8.3550 0.2111 30 1 3.5103 -3.0309 1.6514 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260957932.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:19 Heat of formation + Delta-G solvation = -21.905590 kcal Electronic energy + Delta-G solvation = -14258.753663 eV Core-core repulsion = 11825.480473 eV Total energy + Delta-G solvation = -2433.273190 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.08497 -37.45811 -35.51654 -32.96341 -30.82833 -30.02227 -28.00205 -26.65152 -23.27469 -21.76944 -20.99732 -20.07892 -18.21865 -16.45467 -16.11091 -15.48548 -15.18348 -14.68642 -14.22609 -13.92652 -13.61997 -12.48471 -12.31555 -11.92861 -11.76506 -11.74124 -11.46133 -11.06934 -10.89932 -10.65413 -10.41786 -10.32120 -9.98494 -9.26314 -9.15860 -8.45174 -8.20610 -6.77275 -6.07582 -4.11513 1.64535 1.94031 3.26219 3.33192 3.34906 4.03299 4.05906 4.38380 4.55992 5.11429 5.29045 5.33150 5.39830 5.68304 5.81477 5.87912 5.92861 6.13828 6.40784 6.50004 6.71563 6.79311 6.82149 6.88403 7.00252 7.40916 7.60217 7.78839 7.89551 7.97375 8.28427 8.51546 8.93890 9.52866 11.03355 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.047762 B = 0.006852 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.101165 B = 4085.420522 C = 4422.844228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.013 3.987 10 C 0.147 3.853 11 H 0.066 0.934 12 C -0.074 4.074 13 C -0.203 4.203 14 C 0.227 3.773 15 C -0.206 4.206 16 C -0.061 4.061 17 C -0.218 4.218 18 C 0.158 3.842 19 O -0.501 6.501 20 N -0.715 5.715 21 H 0.262 0.738 22 H 0.028 0.972 23 H 0.024 0.976 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.384 0.616 30 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.623 -12.470 2.798 13.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.024 4.024 10 C 0.043 3.957 11 H 0.084 0.916 12 C -0.112 4.112 13 C -0.209 4.209 14 C 0.118 3.882 15 C -0.229 4.229 16 C -0.080 4.080 17 C -0.239 4.239 18 C 0.113 3.887 19 O -0.310 6.310 20 N -0.342 5.342 21 H 0.071 0.929 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.133 0.867 27 H 0.138 0.862 28 H 0.137 0.863 29 H 0.239 0.761 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.995 -11.916 2.943 13.252 hybrid contribution 0.950 1.108 -0.056 1.461 sum 5.945 -10.808 2.887 12.668 Atomic orbital electron populations 1.69957 1.06074 1.26760 1.50219 1.25013 0.94831 0.99271 0.95169 0.86593 0.79750 0.83504 0.78120 1.20617 1.21205 1.19970 1.21126 0.92773 0.90917 1.51317 0.92802 1.19549 0.93725 0.91087 0.98062 1.21719 0.94322 0.95401 0.84301 0.91589 1.21074 1.01661 0.94217 0.94206 1.20239 1.04506 0.96209 0.99914 1.18363 0.91646 0.86550 0.91594 1.20299 1.08117 0.98101 0.96412 1.20484 0.95959 0.93132 0.98398 1.20878 1.04515 1.01750 0.96797 1.17729 0.90983 0.89012 0.90998 1.84788 1.34300 1.57179 1.54744 1.45143 1.52820 1.14792 1.21436 0.92860 0.95356 0.95810 0.91237 0.89863 0.86700 0.86214 0.86252 0.76100 0.74919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.19 8.96 -34.44 -0.31 -14.50 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.01 0.34 4.46 -27.88 -0.12 0.21 16 10 C 0.15 2.99 3.60 -67.52 -0.24 2.75 16 11 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 12 C -0.07 -1.35 6.54 -27.24 -0.18 -1.53 16 13 C -0.20 -3.65 6.19 -104.12 -0.64 -4.29 16 14 C 0.23 4.11 7.03 -83.68 -0.59 3.52 16 15 C -0.21 -3.22 10.07 -39.17 -0.39 -3.62 16 16 C -0.06 -0.85 10.01 -39.73 -0.40 -1.25 16 17 C -0.22 -3.16 10.00 -39.40 -0.39 -3.55 16 18 C 0.16 2.54 6.70 -39.24 -0.26 2.28 16 19 O -0.50 -7.15 13.46 -19.44 -0.26 -7.42 16 20 N -0.71 -13.68 6.02 -51.68 -0.31 -13.99 16 21 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 22 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.08 1.60 7.71 -51.93 -0.40 1.20 16 26 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 27 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.38 3.47 9.06 45.56 0.41 3.89 16 30 H 0.41 7.57 8.96 -40.82 -0.37 7.21 16 LS Contribution 261.18 15.07 3.94 3.94 Total: -1.00 -31.05 261.18 -7.41 -38.46 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -2.85 Total: 6.96 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -3.63 Total: -18.41 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.43 Total: -39.73 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.26 Total: -7.42 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.05 -7.41 -38.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260957932.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.551 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds