Wall clock time and date at job start Mon Mar 30 2020 20:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 110.73360 * 2 1 4 4 C 1.54369 * 110.82365 * 123.62560 * 2 1 3 5 5 C 1.51226 * 105.12011 * 144.51539 * 4 2 1 6 6 C 1.38741 * 130.68908 * 162.87407 * 5 4 2 7 7 C 1.38586 * 118.55125 * 179.97438 * 6 5 4 8 8 C 1.38221 * 118.99257 * 359.97438 * 7 6 5 9 9 N 1.31688 * 120.80017 * 359.97438 * 8 7 6 10 10 C 1.32298 * 122.03386 * 0.03571 * 9 8 7 11 11 C 1.51477 * 130.14125 * 180.02562 * 10 9 8 12 12 O 1.42896 * 110.38108 * 316.11549 * 11 10 9 13 13 C 1.50702 * 110.29806 * 78.20709 * 11 10 9 14 14 H 1.08001 * 119.99911 * 30.56913 * 13 11 10 15 15 C 1.37870 * 120.00214 * 210.58044 * 13 11 10 16 16 N 1.31514 * 120.00321 * 146.72748 * 15 13 11 17 17 Si 1.86807 * 119.99767 * 326.72572 * 15 13 11 18 18 H 1.48500 * 109.47095 * 275.42992 * 17 15 13 19 19 H 1.48498 * 109.47024 * 35.42669 * 17 15 13 20 20 H 1.48496 * 109.46844 * 155.42909 * 17 15 13 21 21 H 1.08996 * 109.47182 * 177.82769 * 1 2 3 22 22 H 1.09003 * 109.46944 * 297.82491 * 1 2 3 23 23 H 1.09000 * 109.47086 * 57.82639 * 1 2 3 24 24 H 1.09000 * 110.31543 * 263.42390 * 4 2 1 25 25 H 1.09001 * 110.31274 * 25.60146 * 4 2 1 26 26 H 1.07993 * 120.72412 * 359.95701 * 6 5 4 27 27 H 1.08001 * 120.49833 * 179.97438 * 7 6 5 28 28 H 1.07995 * 119.59696 * 179.97438 * 8 7 6 29 29 H 0.96704 * 114.00153 * 62.80524 * 12 11 10 30 30 H 0.96997 * 120.00274 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0193 0.0000 4 6 2.0788 -0.7990 1.2014 5 6 3.3301 -1.4748 0.6873 6 6 4.3921 -2.0512 1.3691 7 6 5.4261 -2.6095 0.6344 8 6 5.3630 -2.5730 -0.7459 9 7 4.3384 -2.0181 -1.3596 10 6 3.3323 -1.4747 -0.6944 11 6 2.0777 -0.7961 -1.2043 12 8 2.3932 0.0896 -2.2804 13 6 1.0723 -1.8251 -1.6531 14 1 1.0403 -2.7931 -1.1751 15 6 0.1935 -1.5310 -2.6739 16 7 -0.1981 -2.4782 -3.4979 17 14 -0.4409 0.2131 -2.8866 18 1 -1.6109 0.4262 -1.9973 19 1 0.6320 1.1768 -2.5323 20 1 -0.8481 0.4229 -4.2992 21 1 -0.3633 -1.0269 -0.0390 22 1 -0.3633 0.4797 0.9089 23 1 -0.3633 0.5472 -0.8699 24 1 2.3227 -0.1263 2.0236 25 1 1.3516 -1.5441 1.5242 26 1 4.4126 -2.0643 2.4487 27 1 6.2684 -3.0661 1.1328 28 1 6.1636 -3.0047 -1.3281 29 1 2.7620 -0.3517 -3.0578 30 1 -0.8166 -2.2713 -4.2158 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260961412.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:22 Heat of formation + Delta-G solvation = 5.948081 kcal Electronic energy + Delta-G solvation = -15216.722802 eV Core-core repulsion = 12784.657437 eV Total energy + Delta-G solvation = -2432.065364 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.18271 -37.06730 -34.19850 -32.35030 -31.67576 -30.37338 -27.20189 -25.92067 -24.07414 -21.84794 -21.10150 -19.10560 -17.32519 -16.28487 -15.84259 -15.06528 -14.84819 -14.26041 -13.68952 -13.40789 -13.25796 -12.60585 -12.39271 -12.13969 -11.91437 -11.68242 -11.39341 -10.79877 -10.53811 -10.43478 -10.07537 -9.49523 -9.37784 -9.15193 -8.87906 -8.39318 -8.20630 -7.89235 -6.30576 -4.15712 1.72125 1.85281 3.38135 3.52615 3.69399 4.40225 4.51516 4.71053 4.93238 5.18054 5.26169 5.39858 5.45084 5.61914 5.71942 5.89508 6.10561 6.22531 6.28713 6.39776 6.47352 6.56324 6.62415 6.82926 6.87076 7.06170 7.29231 7.32435 7.59680 8.16901 8.70586 8.75326 8.97829 9.45632 10.79585 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.038089 B = 0.012412 C = 0.010801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.937722 B = 2255.294529 C = 2591.674530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 H 0.067 0.933 4 C -0.063 4.063 5 C -0.157 4.157 6 C -0.073 4.073 7 C -0.196 4.196 8 C 0.093 3.907 9 N -0.473 5.473 10 C 0.141 3.859 11 C 0.282 3.718 12 O -0.562 6.562 13 C -0.563 4.563 14 H 0.072 0.928 15 C 0.100 3.900 16 N -0.854 5.854 17 Si 0.876 3.124 18 H -0.288 1.288 19 H -0.227 1.227 20 H -0.311 1.311 21 H 0.083 0.917 22 H 0.038 0.962 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.126 0.874 28 H 0.147 0.853 29 H 0.371 0.629 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.221 2.722 8.174 10.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.098 4.098 3 H 0.086 0.914 4 C -0.100 4.100 5 C -0.159 4.159 6 C -0.099 4.099 7 C -0.216 4.216 8 C -0.065 4.065 9 N -0.181 5.181 10 C 0.003 3.997 11 C 0.240 3.760 12 O -0.369 6.369 13 C -0.599 4.599 14 H 0.090 0.910 15 C -0.108 4.108 16 N -0.486 5.486 17 Si 0.707 3.293 18 H -0.217 1.217 19 H -0.151 1.151 20 H -0.240 1.240 21 H 0.102 0.898 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.140 0.860 27 H 0.144 0.856 28 H 0.164 0.836 29 H 0.219 0.781 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.892 3.081 7.512 10.032 hybrid contribution -0.065 0.032 0.456 0.462 sum 5.827 3.113 7.969 10.351 Atomic orbital electron populations 1.22051 0.94300 1.03821 0.99449 1.21919 0.96357 0.97822 0.93696 0.91448 1.20925 0.93209 0.98199 0.97692 1.21491 0.96893 1.00810 0.96726 1.20938 0.92956 0.96383 0.99646 1.21866 1.00071 1.03855 0.95819 1.22585 0.95806 0.96179 0.91885 1.66889 1.00921 1.08381 1.41952 1.23319 0.93637 0.91692 0.91011 1.18686 0.86280 0.86425 0.84559 1.86473 1.84880 1.38132 1.27374 1.20691 1.18430 1.00117 1.20648 0.91012 1.24856 0.95379 0.97651 0.92907 1.70249 1.30330 1.35436 1.12615 0.87234 0.79374 0.88227 0.74507 1.21682 1.15095 1.24011 0.89798 0.94300 0.93045 0.91640 0.89793 0.85954 0.85602 0.83556 0.78094 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 7.43 37.16 0.28 -2.60 16 2 C -0.08 -1.64 3.16 -89.17 -0.28 -1.92 16 3 H 0.07 1.37 8.11 -51.93 -0.42 0.95 16 4 C -0.06 -1.13 6.31 -26.91 -0.17 -1.30 16 5 C -0.16 -3.07 6.16 -104.20 -0.64 -3.72 16 6 C -0.07 -1.20 10.17 -39.27 -0.40 -1.60 16 7 C -0.20 -3.03 10.12 -39.46 -0.40 -3.43 16 8 C 0.09 1.65 11.18 -17.62 -0.20 1.45 16 9 N -0.47 -10.43 10.35 -9.19 -0.10 -10.53 16 10 C 0.14 3.21 6.29 -82.04 -0.52 2.70 16 11 C 0.28 6.75 0.75 -91.81 -0.07 6.68 16 12 O -0.56 -13.60 9.17 -35.23 -0.32 -13.92 16 13 C -0.56 -15.34 6.86 -34.44 -0.24 -15.58 16 14 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 15 C 0.10 2.79 5.14 -17.82 -0.09 2.70 16 16 N -0.85 -25.16 13.96 55.43 0.77 -24.39 16 17 Si 0.88 21.62 22.59 -169.99 -3.84 17.78 16 18 H -0.29 -6.90 6.56 56.52 0.37 -6.53 16 19 H -0.23 -5.54 5.59 56.52 0.32 -5.22 16 20 H -0.31 -7.87 7.11 56.52 0.40 -7.47 16 21 H 0.08 1.84 6.65 -51.93 -0.35 1.50 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 1.14 2.54 -51.93 -0.13 1.01 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.08 1.48 7.89 -51.93 -0.41 1.07 16 26 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 27 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 28 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.37 8.65 9.07 45.56 0.41 9.06 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 239.99 15.07 3.62 3.62 Total: -1.00 -31.00 239.99 -5.28 -36.28 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -2.68 Total: 7.80 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -2.73 Total: -16.63 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.68 Total: -34.92 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.32 Total: -13.92 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -3.84 Total: 17.78 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.00 -5.28 -36.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961412.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.226 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds