Wall clock time and date at job start Mon Mar 30 2020 20:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86799 * 119.99744 * 2 1 4 4 H 1.48497 * 109.47241 * 269.99823 * 3 2 1 5 5 H 1.48503 * 109.47245 * 29.99587 * 3 2 1 6 6 H 1.48507 * 109.47195 * 149.99610 * 3 2 1 7 7 C 1.39947 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99744 * 195.51145 * 7 2 1 9 9 C 1.41390 * 120.00083 * 15.50761 * 7 2 1 10 10 C 1.40587 * 120.10288 * 25.33155 * 9 7 2 11 11 C 1.37593 * 119.60821 * 180.11554 * 10 9 7 12 12 C 1.38489 * 120.13906 * 0.02992 * 11 10 9 13 13 C 1.39009 * 120.81462 * 359.97000 * 12 11 10 14 14 C 1.37078 * 120.08605 * 0.02562 * 13 12 11 15 15 C 1.50621 * 121.82964 * 180.48372 * 14 13 12 16 16 O 1.42725 * 110.15731 * 343.85671 * 15 14 13 17 17 C 1.43225 * 113.08063 * 51.67208 * 16 15 14 18 18 C 1.50783 * 118.65234 * 179.84490 * 13 12 11 19 19 H 1.09001 * 109.37130 * 283.12145 * 18 13 12 20 20 N 1.46902 * 109.41483 * 42.95819 * 18 13 12 21 21 H 0.96999 * 120.00099 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.19225 * 0.12873 * 10 9 7 23 23 H 1.08008 * 119.93280 * 180.02562 * 11 10 9 24 24 H 1.07997 * 119.59145 * 179.97438 * 12 11 10 25 25 H 1.08996 * 109.33666 * 223.68619 * 15 14 13 26 26 H 1.08997 * 109.33459 * 104.02181 * 15 14 13 27 27 H 1.09000 * 109.63392 * 49.15979 * 17 16 15 28 28 H 1.08988 * 109.64360 * 169.57211 * 17 16 15 29 29 H 1.00907 * 110.99905 * 180.32756 * 20 18 13 30 30 H 1.00901 * 111.00096 * 304.27690 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4395 2.6527 0.7000 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2120 0.0005 8 1 3.0585 -1.2288 0.2507 9 6 1.3397 -2.4143 -0.3263 10 6 0.1922 -2.3850 -1.1380 11 6 -0.4516 -3.5610 -1.4477 12 6 0.0287 -4.7656 -0.9617 13 6 1.1622 -4.8081 -0.1582 14 6 1.8203 -3.6494 0.1636 15 6 3.0579 -3.6509 1.0221 16 8 3.1800 -4.8972 1.7069 17 6 3.0859 -6.0289 0.8341 18 6 1.6405 -6.1458 0.3472 19 1 1.0052 -6.4688 1.1719 20 7 1.5695 -7.1320 -0.7392 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1817 -1.4450 -1.5163 23 1 -1.3334 -3.5446 -2.0712 24 1 -0.4838 -5.6832 -1.2100 25 1 2.9923 -2.8434 1.7513 26 1 3.9342 -3.4980 0.3922 27 1 3.7499 -5.8898 -0.0190 28 1 3.3679 -6.9326 1.3743 29 1 1.8799 -8.0392 -0.4249 30 1 0.6374 -7.1815 -1.1224 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713797773.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:54 Heat of formation + Delta-G solvation = -50.196202 kcal Electronic energy + Delta-G solvation = -14759.539285 eV Core-core repulsion = 12325.039322 eV Total energy + Delta-G solvation = -2434.499963 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.85345 -38.20024 -36.35217 -34.98282 -32.40570 -30.96010 -29.18964 -27.38237 -25.79148 -24.07014 -22.12451 -20.67924 -18.90173 -17.79290 -17.44142 -16.92433 -16.48323 -15.97341 -15.48557 -15.29872 -14.86525 -14.54412 -14.22836 -13.68836 -13.35433 -13.05748 -12.89624 -12.74820 -12.34450 -12.22162 -12.02791 -11.46213 -11.35207 -11.06538 -10.40506 -9.73529 -9.24058 -9.06054 -8.63027 -6.36462 0.93498 1.02722 1.38552 1.51274 1.52732 2.20034 2.71015 2.97288 3.58744 3.84204 3.90639 4.07810 4.32147 4.34885 4.51781 4.60963 4.68666 4.82454 4.88548 4.97671 5.15686 5.35406 5.46444 5.68624 5.94046 6.00216 6.10453 6.20135 6.29361 6.36899 6.65757 6.69829 6.92647 7.02066 8.32828 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.038346 B = 0.009807 C = 0.008090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.027758 B = 2854.425146 C = 3460.087886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.491 4.491 8 H 0.081 0.919 9 C 0.086 3.914 10 C -0.193 4.193 11 C -0.112 4.112 12 C -0.228 4.228 13 C -0.056 4.056 14 C -0.243 4.243 15 C 0.134 3.866 16 O -0.396 6.396 17 C 0.067 3.933 18 C 0.109 3.891 19 H 0.045 0.955 20 N -0.836 5.836 21 H 0.287 0.713 22 H 0.103 0.897 23 H 0.110 0.890 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.121 0.879 29 H 0.354 0.646 30 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 -6.829 0.178 7.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.521 4.521 8 H 0.099 0.901 9 C 0.084 3.916 10 C -0.213 4.213 11 C -0.130 4.130 12 C -0.247 4.247 13 C -0.057 4.057 14 C -0.245 4.245 15 C 0.058 3.942 16 O -0.314 6.314 17 C -0.010 4.010 18 C -0.002 4.002 19 H 0.063 0.937 20 N -0.370 5.370 21 H 0.098 0.902 22 H 0.121 0.879 23 H 0.128 0.872 24 H 0.135 0.865 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.139 0.861 29 H 0.168 0.832 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.242 -6.231 0.048 7.024 hybrid contribution -0.881 0.546 0.182 1.052 sum 2.361 -5.685 0.230 6.160 Atomic orbital electron populations 1.69880 1.09039 1.30461 1.35747 1.26772 0.95497 1.04548 0.91228 0.85206 0.79176 0.75932 0.79457 1.18822 1.19386 1.17919 1.19816 0.97620 0.91803 1.42822 0.90077 1.17859 0.92121 0.92306 0.89330 1.21300 1.00100 0.97101 1.02777 1.20946 0.99015 0.93226 0.99820 1.20487 1.00282 0.96798 1.07153 1.19234 0.95527 0.93454 0.97479 1.20280 1.02740 0.93837 1.07638 1.20968 0.93767 0.85124 0.94369 1.87938 1.93416 1.14853 1.35143 1.22650 0.94451 0.89576 0.94283 1.20582 0.97295 0.90167 0.92169 0.93744 1.58597 1.32745 1.11146 1.34562 0.90200 0.87923 0.87235 0.86547 0.89548 0.93427 0.92679 0.86146 0.83203 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.44 10.87 21.83 0.24 -43.20 16 2 C 0.03 1.73 5.18 85.26 0.44 2.17 16 3 Si 0.98 38.19 29.59 68.60 2.03 40.22 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.49 -26.22 8.15 23.46 0.19 -26.03 16 8 H 0.08 4.12 7.00 -2.91 -0.02 4.10 16 9 C 0.09 4.71 5.59 -21.18 -0.12 4.59 16 10 C -0.19 -10.41 8.68 22.69 0.20 -10.22 16 11 C -0.11 -5.31 10.02 22.18 0.22 -5.09 16 12 C -0.23 -9.96 9.22 22.51 0.21 -9.75 16 13 C -0.06 -2.52 5.57 -19.93 -0.11 -2.63 16 14 C -0.24 -12.05 5.86 -19.41 -0.11 -12.17 16 15 C 0.13 5.90 5.63 71.21 0.40 6.30 16 16 O -0.40 -15.77 10.81 -148.98 -1.61 -17.38 16 17 C 0.07 2.21 6.42 71.97 0.46 2.67 16 18 C 0.11 3.78 3.56 44.18 0.16 3.93 16 19 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 20 N -0.84 -23.06 9.13 -171.73 -1.57 -24.63 16 21 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 22 H 0.10 5.77 6.13 -2.91 -0.02 5.75 16 23 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 24 H 0.12 4.25 6.58 -2.91 -0.02 4.23 16 25 H 0.09 3.93 7.41 -2.39 -0.02 3.91 16 26 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.05 1.85 8.07 -2.39 -0.02 1.83 16 28 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.35 7.19 9.04 -89.69 -0.81 6.38 16 30 H 0.35 9.17 7.15 -89.69 -0.64 8.53 16 Total: -1.00 -60.79 247.75 0.75 -60.04 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -0.28 Total: 31.18 kcal Atomic # 6 Polarization: -48.16 SS G_CDS: 1.94 Total: -46.22 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -1.33 Total: -67.83 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -1.61 Total: -17.38 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.22 kcal Total: -60.79 0.75 -60.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713797773.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.844 kcal (2) G-P(sol) polarization free energy of solvation -60.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds