Wall clock time and date at job start Mon Mar 30 2020 20:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86800 * 120.00306 * 2 1 4 4 H 1.48500 * 109.47177 * 274.98987 * 3 2 1 5 5 H 1.48497 * 109.46752 * 34.98910 * 3 2 1 6 6 H 1.48500 * 109.47075 * 154.98596 * 3 2 1 7 7 C 1.40105 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00267 * 173.73480 * 7 2 1 9 9 C 1.41540 * 119.99863 * 354.01027 * 7 2 1 10 10 C 1.40935 * 120.61642 * 185.81381 * 9 7 2 11 11 C 1.38335 * 118.31310 * 179.97438 * 10 9 7 12 12 N 1.32372 * 119.34425 * 0.02562 * 11 10 9 13 13 C 1.32727 * 121.21721 * 359.97438 * 12 11 10 14 14 N 1.38397 * 119.07367 * 179.97438 * 13 12 11 15 15 C 1.48530 * 111.00390 * 242.61123 * 14 13 12 16 16 C 1.54931 * 103.22547 * 159.71944 * 15 14 13 17 17 C 1.54590 * 102.92339 * 322.58583 * 16 15 14 18 18 C 1.47904 * 110.99725 * 0.02562 * 14 13 12 19 19 N 1.32101 * 121.85670 * 359.72321 * 13 12 11 20 20 H 0.97003 * 119.99577 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.84792 * 0.03092 * 10 9 7 22 22 H 1.07997 * 120.33038 * 179.97438 * 11 10 9 23 23 H 1.09005 * 110.66276 * 278.15651 * 15 14 13 24 24 H 1.09000 * 110.66369 * 41.28384 * 15 14 13 25 25 H 1.09003 * 110.72113 * 204.22611 * 16 15 14 26 26 H 1.09002 * 110.87951 * 81.01604 * 16 15 14 27 27 H 1.09006 * 110.30784 * 263.04117 * 17 16 15 28 28 H 1.08996 * 110.31214 * 140.87831 * 17 16 15 29 29 H 1.09003 * 109.92056 * 333.51102 * 18 14 13 30 30 H 1.09007 * 109.91632 * 94.79969 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3829 2.1073 -1.3948 5 1 1.4950 2.6198 0.8028 6 1 3.5871 1.4119 0.5920 7 6 2.0073 -1.2134 -0.0005 8 1 3.0823 -1.2162 -0.1026 9 6 1.3053 -2.4358 0.1268 10 6 2.0025 -3.6544 0.2504 11 6 1.2687 -4.8207 0.3726 12 7 -0.0536 -4.7585 0.3694 13 6 -0.6874 -3.5983 0.2517 14 7 -2.0713 -3.5848 0.2531 15 6 -2.6000 -3.0708 -1.0362 16 6 -4.0531 -3.6076 -1.0627 17 6 -3.9151 -5.0102 -0.4275 18 6 -2.6145 -4.9532 0.3952 19 7 -0.0345 -2.4555 0.1381 20 1 -0.4850 0.8401 0.0004 21 1 3.0823 -3.6770 0.2506 22 1 1.7696 -5.7726 0.4688 23 1 -2.5922 -1.9808 -1.0479 24 1 -2.0271 -3.4697 -1.8733 25 1 -4.4181 -3.6823 -2.0871 26 1 -4.7113 -2.9767 -0.4653 27 1 -3.8387 -5.7714 -1.2041 28 1 -4.7652 -5.2164 0.2229 29 1 -1.8986 -5.6789 0.0090 30 1 -2.8285 -5.1607 1.4437 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260797423.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:20 Heat of formation + Delta-G solvation = 58.527324 kcal Electronic energy + Delta-G solvation = -14661.388861 eV Core-core repulsion = 12263.896255 eV Total energy + Delta-G solvation = -2397.492606 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.47671 -37.44854 -34.01231 -31.88060 -31.35037 -28.65379 -28.33945 -26.22645 -22.52124 -22.17793 -20.38210 -19.98332 -17.69251 -16.51218 -15.49236 -15.15810 -14.70434 -14.03469 -13.64906 -13.30098 -13.02509 -12.64219 -12.20683 -11.69127 -11.62209 -11.32455 -11.14617 -10.94242 -10.74746 -10.63525 -10.27330 -10.15986 -9.73018 -9.04237 -8.94486 -8.46841 -7.49563 -7.15404 -6.43589 -4.77478 2.66908 2.88105 3.04686 3.08094 3.22261 3.87781 4.45479 4.74430 5.09639 5.14542 5.36091 5.70573 5.81021 5.84346 5.95866 6.11008 6.19364 6.31808 6.39341 6.51033 6.60756 6.71379 6.74322 6.78488 7.05877 7.21112 7.41002 7.60326 8.04067 8.14397 8.58144 8.79059 9.07352 10.12045 10.24592 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.034926 B = 0.009504 C = 0.007680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.501086 B = 2945.267717 C = 3644.926551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.068 3.932 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.420 4.420 8 H 0.088 0.912 9 C 0.282 3.718 10 C -0.340 4.340 11 C 0.147 3.853 12 N -0.651 5.651 13 C 0.468 3.532 14 N -0.445 5.445 15 C 0.065 3.935 16 C -0.125 4.125 17 C -0.131 4.131 18 C 0.041 3.959 19 N -0.514 5.514 20 H 0.276 0.724 21 H 0.106 0.894 22 H 0.127 0.873 23 H 0.094 0.906 24 H 0.039 0.961 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 -2.791 -2.034 5.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.159 4.159 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.454 4.454 8 H 0.106 0.894 9 C 0.151 3.849 10 C -0.368 4.368 11 C -0.011 4.011 12 N -0.379 5.379 13 C 0.108 3.892 14 N -0.166 5.166 15 C -0.062 4.062 16 C -0.164 4.164 17 C -0.169 4.169 18 C -0.087 4.087 19 N -0.237 5.237 20 H 0.087 0.913 21 H 0.125 0.875 22 H 0.144 0.856 23 H 0.113 0.887 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.360 -2.308 -1.588 6.048 hybrid contribution 1.694 0.217 -0.418 1.758 sum -3.666 -2.091 -2.007 4.674 Atomic orbital electron populations 1.70105 1.07237 1.28137 1.26685 1.26139 0.94958 1.01271 0.93558 0.86272 0.80625 0.80635 0.79122 1.19386 1.19916 1.18366 1.19656 0.94721 0.89157 1.41858 0.89365 1.18650 0.87454 0.92109 0.86652 1.22331 0.99803 0.95367 1.19308 1.22055 0.89449 0.96713 0.92922 1.67853 1.10540 1.29051 1.30480 1.21102 0.90160 0.86058 0.91844 1.61285 1.03571 1.19937 1.31812 1.23011 0.92904 1.01725 0.88592 1.22532 0.97072 0.96379 1.00368 1.22441 0.98066 0.97251 0.99189 1.22774 0.94938 0.90635 1.00328 1.69082 1.08461 1.24040 1.22126 0.91311 0.87545 0.85559 0.88722 0.94222 0.91407 0.90856 0.91902 0.91511 0.90173 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.46 11.55 55.55 0.64 -17.82 16 2 C 0.07 1.71 5.49 -17.34 -0.10 1.62 16 3 Si 0.91 18.23 29.56 -169.99 -5.03 13.20 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.42 -11.15 9.19 -37.62 -0.35 -11.50 16 8 H 0.09 2.17 7.86 -52.49 -0.41 1.76 16 9 C 0.28 7.84 6.57 -84.64 -0.56 7.28 16 10 C -0.34 -8.50 9.94 -38.53 -0.38 -8.88 16 11 C 0.15 3.47 11.29 -17.28 -0.20 3.28 16 12 N -0.65 -16.26 8.11 -14.02 -0.11 -16.37 16 13 C 0.47 12.24 6.98 -323.02 -2.25 9.98 16 14 N -0.44 -10.10 5.35 -171.46 -0.92 -11.02 16 15 C 0.06 1.29 6.31 -1.90 -0.01 1.28 16 16 C -0.13 -1.89 7.06 -24.88 -0.18 -2.07 16 17 C -0.13 -1.93 6.93 -25.37 -0.18 -2.11 16 18 C 0.04 0.78 6.33 -2.75 -0.02 0.77 16 19 N -0.51 -14.57 7.84 -11.87 -0.09 -14.66 16 20 H 0.28 6.55 8.29 -40.82 -0.34 6.21 16 21 H 0.11 2.39 8.06 -52.48 -0.42 1.97 16 22 H 0.13 2.48 8.06 -52.49 -0.42 2.05 16 23 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 24 H 0.04 0.83 7.99 -51.93 -0.42 0.41 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.63 6.45 -51.93 -0.34 1.29 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 255.39 15.07 3.85 3.85 Total: -1.00 -30.13 255.39 -9.55 -39.68 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -3.68 Total: 3.50 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -4.21 Total: -0.35 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.48 Total: -59.88 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.13 -9.55 -39.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797423.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.205 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds