Wall clock time and date at job start Mon Mar 30 2020 20:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86800 * 120.00306 * 2 1 4 4 H 1.48500 * 109.47177 * 274.98987 * 3 2 1 5 5 H 1.48497 * 109.46752 * 34.98910 * 3 2 1 6 6 H 1.48500 * 109.47075 * 154.98596 * 3 2 1 7 7 C 1.40105 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00267 * 173.73480 * 7 2 1 9 9 C 1.41540 * 119.99863 * 354.01027 * 7 2 1 10 10 C 1.40935 * 120.61642 * 185.81381 * 9 7 2 11 11 C 1.38335 * 118.31310 * 179.97438 * 10 9 7 12 12 N 1.32372 * 119.34425 * 0.02562 * 11 10 9 13 13 C 1.32727 * 121.21721 * 359.97438 * 12 11 10 14 14 N 1.38397 * 119.07367 * 179.97438 * 13 12 11 15 15 C 1.48530 * 111.00390 * 242.61123 * 14 13 12 16 16 C 1.54931 * 103.22547 * 159.71944 * 15 14 13 17 17 C 1.54590 * 102.92339 * 322.58583 * 16 15 14 18 18 C 1.47904 * 110.99725 * 0.02562 * 14 13 12 19 19 N 1.32101 * 121.85670 * 359.72321 * 13 12 11 20 20 H 0.97003 * 119.99577 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.84792 * 0.03092 * 10 9 7 22 22 H 1.07997 * 120.33038 * 179.97438 * 11 10 9 23 23 H 1.09005 * 110.66276 * 278.15651 * 15 14 13 24 24 H 1.09000 * 110.66369 * 41.28384 * 15 14 13 25 25 H 1.09003 * 110.72113 * 204.22611 * 16 15 14 26 26 H 1.09002 * 110.87951 * 81.01604 * 16 15 14 27 27 H 1.09006 * 110.30784 * 263.04117 * 17 16 15 28 28 H 1.08996 * 110.31214 * 140.87831 * 17 16 15 29 29 H 1.09003 * 109.92056 * 333.51102 * 18 14 13 30 30 H 1.09007 * 109.91632 * 94.79969 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3829 2.1073 -1.3948 5 1 1.4950 2.6198 0.8028 6 1 3.5871 1.4119 0.5920 7 6 2.0073 -1.2134 -0.0005 8 1 3.0823 -1.2162 -0.1026 9 6 1.3053 -2.4358 0.1268 10 6 2.0025 -3.6544 0.2504 11 6 1.2687 -4.8207 0.3726 12 7 -0.0536 -4.7585 0.3694 13 6 -0.6874 -3.5983 0.2517 14 7 -2.0713 -3.5848 0.2531 15 6 -2.6000 -3.0708 -1.0362 16 6 -4.0531 -3.6076 -1.0627 17 6 -3.9151 -5.0102 -0.4275 18 6 -2.6145 -4.9532 0.3952 19 7 -0.0345 -2.4555 0.1381 20 1 -0.4850 0.8401 0.0004 21 1 3.0823 -3.6770 0.2506 22 1 1.7696 -5.7726 0.4688 23 1 -2.5922 -1.9808 -1.0479 24 1 -2.0271 -3.4697 -1.8733 25 1 -4.4181 -3.6823 -2.0871 26 1 -4.7113 -2.9767 -0.4653 27 1 -3.8387 -5.7714 -1.2041 28 1 -4.7652 -5.2164 0.2229 29 1 -1.8986 -5.6789 0.0090 30 1 -2.8285 -5.1607 1.4437 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260797423.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:19 Heat of formation + Delta-G solvation = 40.456836 kcal Electronic energy + Delta-G solvation = -14662.172456 eV Core-core repulsion = 12263.896255 eV Total energy + Delta-G solvation = -2398.276201 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.29153 -39.11501 -35.91486 -33.53993 -33.29482 -30.42230 -29.84292 -28.15645 -24.26845 -24.03626 -21.94908 -21.54172 -19.57150 -18.30936 -17.22467 -16.79226 -16.42919 -15.81910 -15.41675 -15.04902 -14.60168 -14.36584 -13.81854 -13.27660 -13.15978 -12.99000 -12.87771 -12.63228 -12.23438 -12.05330 -11.91771 -11.60253 -11.43794 -10.93983 -10.80166 -10.39935 -9.43826 -9.01473 -8.33983 -6.78646 0.75014 1.02645 1.39824 1.53063 1.57278 2.19060 2.71611 2.88979 3.67908 3.70943 3.85964 4.08124 4.13965 4.37824 4.55497 4.56677 4.66034 4.85373 4.94328 4.96838 5.00623 5.09359 5.16400 5.18580 5.31004 5.36692 5.67392 5.86816 6.08711 6.24364 6.65044 6.81430 7.12860 8.19158 8.35413 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.034926 B = 0.009504 C = 0.007680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.501086 B = 2945.267717 C = 3644.926551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.022 3.978 3 Si 0.994 3.006 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.448 4.448 8 H 0.100 0.900 9 C 0.244 3.756 10 C -0.357 4.357 11 C 0.145 3.855 12 N -0.654 5.654 13 C 0.452 3.548 14 N -0.463 5.463 15 C 0.064 3.936 16 C -0.111 4.111 17 C -0.119 4.119 18 C 0.039 3.961 19 N -0.548 5.548 20 H 0.283 0.717 21 H 0.126 0.874 22 H 0.169 0.831 23 H 0.069 0.931 24 H 0.021 0.979 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 -2.890 -2.272 5.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.202 4.202 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.481 4.481 8 H 0.118 0.882 9 C 0.114 3.886 10 C -0.385 4.385 11 C -0.013 4.013 12 N -0.383 5.383 13 C 0.093 3.907 14 N -0.184 5.184 15 C -0.062 4.062 16 C -0.149 4.149 17 C -0.157 4.157 18 C -0.089 4.089 19 N -0.272 5.272 20 H 0.094 0.906 21 H 0.144 0.856 22 H 0.186 0.814 23 H 0.088 0.912 24 H 0.040 0.960 25 H 0.116 0.884 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.844 -2.439 -1.829 6.592 hybrid contribution 1.826 0.181 -0.325 1.863 sum -4.018 -2.259 -2.154 5.088 Atomic orbital electron populations 1.70211 1.09116 1.29640 1.27089 1.27156 0.95781 1.04921 0.92362 0.85019 0.79082 0.75070 0.79503 1.18395 1.19282 1.17551 1.20105 0.95499 0.89931 1.42584 0.88245 1.19230 0.88019 0.93827 0.87531 1.22557 1.00890 0.95076 1.19956 1.22731 0.89189 0.98108 0.91283 1.68009 1.11201 1.28452 1.30621 1.21613 0.91680 0.86024 0.91380 1.61301 1.01985 1.22259 1.32897 1.22995 0.96013 1.00278 0.86943 1.22520 0.93411 0.96373 1.02575 1.22428 0.96461 0.97352 0.99454 1.22879 0.96608 0.88188 1.01214 1.69061 1.09105 1.25389 1.23673 0.90639 0.85607 0.81372 0.91232 0.96005 0.88383 0.89848 0.90054 0.88640 0.91784 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -40.01 11.55 21.85 0.25 -39.76 16 2 C 0.02 1.11 5.49 85.32 0.47 1.58 16 3 Si 0.99 37.33 29.56 68.60 2.03 39.35 16 4 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 5 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 6 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.45 -24.25 9.19 23.54 0.22 -24.04 16 8 H 0.10 4.93 7.86 -2.91 -0.02 4.91 16 9 C 0.24 13.97 6.57 40.29 0.26 14.23 16 10 C -0.36 -18.03 9.94 22.95 0.23 -17.80 16 11 C 0.15 6.80 11.29 84.63 0.96 7.75 16 12 N -0.65 -32.92 8.11 -198.26 -1.61 -34.52 16 13 C 0.45 24.26 6.98 261.56 1.83 26.08 16 14 N -0.46 -21.29 5.35 -696.38 -3.73 -25.02 16 15 C 0.06 2.61 6.31 86.65 0.55 3.16 16 16 C -0.11 -3.08 7.06 31.80 0.22 -2.86 16 17 C -0.12 -3.14 6.93 31.48 0.22 -2.92 16 18 C 0.04 1.43 6.33 86.45 0.55 1.98 16 19 N -0.55 -32.19 7.84 -191.47 -1.50 -33.69 16 20 H 0.28 13.76 8.29 -92.71 -0.77 12.99 16 21 H 0.13 5.64 8.06 -2.91 -0.02 5.61 16 22 H 0.17 6.26 8.06 -2.91 -0.02 6.23 16 23 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 24 H 0.02 0.93 7.99 -2.39 -0.02 0.91 16 25 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 2.57 6.45 -2.39 -0.02 2.56 16 30 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -67.49 255.39 2.07 -65.42 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 1.13 Total: 21.06 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.50 Total: 7.16 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -6.58 Total: -133.00 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.35 kcal Total: -67.49 2.07 -65.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797423.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.874 kcal (2) G-P(sol) polarization free energy of solvation -67.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds