Wall clock time and date at job start Mon Mar 30 2020 20:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47909 * 111.00123 * 2 1 4 4 C 1.54588 * 102.63510 * 210.80110 * 3 2 1 5 5 H 1.08999 * 110.73970 * 143.83584 * 4 3 2 6 6 C 1.50700 * 110.73779 * 267.16108 * 4 3 2 7 7 H 1.08000 * 119.99735 * 354.87931 * 6 4 3 8 8 C 1.37880 * 119.99973 * 174.87739 * 6 4 3 9 9 N 1.31510 * 119.99955 * 0.02562 * 8 6 4 10 10 Si 1.86799 * 119.99927 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47137 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46725 * 120.00484 * 10 8 6 13 13 H 1.48495 * 109.47421 * 240.00422 * 10 8 6 14 14 C 1.51602 * 102.84592 * 25.49792 * 4 3 2 15 15 C 1.37975 * 131.48250 * 163.89740 * 14 4 3 16 16 C 1.38197 * 120.14928 * 180.65353 * 15 14 4 17 17 C 1.38813 * 119.83233 * 359.97438 * 16 15 14 18 18 O 1.35896 * 119.93035 * 179.86653 * 17 16 15 19 19 C 1.38400 * 120.14130 * 359.89495 * 17 16 15 20 20 C 1.39007 * 107.94580 * 344.22849 * 14 4 3 21 21 H 1.09003 * 109.47200 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46878 * 300.06980 * 1 2 3 23 23 H 1.08994 * 109.47444 * 60.07230 * 1 2 3 24 24 H 1.09004 * 110.77907 * 329.08768 * 3 2 1 25 25 H 1.09005 * 110.77979 * 92.51085 * 3 2 1 26 26 H 0.97000 * 119.99878 * 179.97438 * 9 8 6 27 27 H 1.07997 * 119.92406 * 0.62693 * 15 14 4 28 28 H 1.08000 * 120.08350 * 179.97438 * 16 15 14 29 29 H 0.96691 * 113.99993 * 90.00189 * 18 17 16 30 30 H 1.07999 * 119.92344 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.3299 1.2322 -0.7724 5 1 3.5181 2.1105 -1.3898 6 6 4.4743 0.9908 0.1779 7 1 4.3073 1.0260 1.2443 8 6 5.7346 0.7251 -0.3142 9 7 5.9381 0.6827 -1.6128 10 14 7.1534 0.4266 0.8637 11 1 6.6654 0.5293 2.2625 12 1 7.7113 -0.9301 0.6329 13 1 8.2112 1.4428 0.6322 14 6 3.0833 0.0114 -1.6368 15 6 3.7462 -0.4720 -2.7462 16 6 3.3045 -1.6221 -3.3722 17 6 2.1916 -2.2913 -2.8820 18 8 1.7539 -3.4210 -3.4977 19 6 1.5264 -1.8103 -1.7677 20 6 1.9709 -0.6526 -1.1329 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5149 0.8894 23 1 -0.3634 0.5127 -0.8906 24 1 1.3214 2.0552 -0.5236 25 1 2.1794 1.7259 1.0182 26 1 6.8248 0.4962 -1.9589 27 1 4.6119 0.0499 -3.1263 28 1 3.8240 -1.9993 -4.2408 29 1 2.1491 -4.2341 -3.1548 30 1 0.6606 -2.3335 -1.3895 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260953587.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:24 Heat of formation + Delta-G solvation = -2.172724 kcal Electronic energy + Delta-G solvation = -14843.254803 eV Core-core repulsion = 12410.837294 eV Total energy + Delta-G solvation = -2432.417509 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.83208 -37.59885 -34.60396 -33.36699 -30.75312 -29.09506 -27.42421 -25.68695 -24.00967 -21.79409 -20.43570 -19.90034 -17.39445 -16.66130 -15.60636 -14.90500 -14.68767 -14.47674 -14.29646 -13.48122 -13.17567 -12.58853 -12.38239 -11.87486 -11.56639 -11.46571 -11.22463 -10.92176 -10.78246 -10.58751 -10.47794 -9.69785 -9.54767 -9.39963 -8.98399 -8.54833 -7.60977 -6.78982 -6.07243 -4.15372 2.23800 2.34756 3.26306 3.34471 3.38704 4.36326 4.42686 4.57901 5.11248 5.22573 5.53504 5.67615 5.78196 5.82565 6.06760 6.08908 6.15514 6.27166 6.42549 6.51013 6.73404 6.86530 7.13897 7.34766 7.44951 7.59757 7.70926 7.84561 7.95548 8.07315 8.21017 8.35547 8.85300 9.48334 10.95107 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.012017 C = 0.009257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.687769 B = 2329.471148 C = 3024.116445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.471 5.471 3 C 0.049 3.951 4 C 0.075 3.925 5 H 0.042 0.958 6 C -0.496 4.496 7 H 0.064 0.936 8 C 0.063 3.937 9 N -0.884 5.884 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 C -0.074 4.074 15 C -0.045 4.045 16 C -0.184 4.184 17 C 0.090 3.910 18 O -0.506 6.506 19 C -0.179 4.179 20 C 0.085 3.915 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.029 0.971 24 H 0.036 0.964 25 H 0.085 0.915 26 H 0.261 0.739 27 H 0.155 0.845 28 H 0.112 0.888 29 H 0.377 0.623 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.245 -2.648 -0.583 6.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.186 5.186 3 C -0.077 4.077 4 C 0.056 3.944 5 H 0.060 0.940 6 C -0.534 4.534 7 H 0.082 0.918 8 C -0.139 4.139 9 N -0.522 5.522 10 Si 0.725 3.275 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.210 1.210 14 C -0.078 4.078 15 C -0.064 4.064 16 C -0.203 4.203 17 C 0.045 3.955 18 O -0.315 6.315 19 C -0.201 4.201 20 C -0.013 4.013 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.172 0.828 28 H 0.131 0.869 29 H 0.231 0.769 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.338 -2.479 -0.494 6.824 hybrid contribution 0.849 -0.503 0.330 1.040 sum -5.489 -2.982 -0.165 6.249 Atomic orbital electron populations 1.22488 0.87899 1.01861 1.00528 1.60546 1.07026 1.15771 1.35218 1.23410 0.96821 0.85788 1.01654 1.18623 0.91200 0.92132 0.92437 0.93980 1.21045 0.91664 1.48195 0.92478 0.91804 1.24962 0.98828 0.94888 0.95202 1.69805 1.22102 1.48892 1.11423 0.86440 0.82015 0.77786 0.81243 1.19707 1.21033 1.20967 1.21119 0.93113 0.99757 0.93770 1.21025 0.97721 0.93986 0.93622 1.21272 0.97457 0.99258 1.02356 1.17951 0.94942 0.89209 0.93353 1.84777 1.69329 1.15283 1.62097 1.20269 1.03256 0.98821 0.97758 1.19532 0.96860 0.95207 0.89654 0.91673 0.91455 0.95201 0.94527 0.89672 0.92866 0.82818 0.86950 0.76894 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.16 60.07 0.55 0.86 16 2 N -0.47 -9.77 5.31 -176.86 -0.94 -10.71 16 3 C 0.05 1.02 6.43 -2.43 -0.02 1.00 16 4 C 0.07 1.84 3.02 -91.65 -0.28 1.56 16 5 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 6 C -0.50 -13.26 8.59 -34.44 -0.30 -13.56 16 7 H 0.06 1.71 7.59 -52.49 -0.40 1.31 16 8 C 0.06 1.68 5.33 -17.82 -0.09 1.59 16 9 N -0.88 -23.83 9.80 55.43 0.54 -23.29 16 10 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C -0.07 -1.81 5.22 -103.99 -0.54 -2.35 16 15 C -0.04 -1.05 8.88 -39.69 -0.35 -1.40 16 16 C -0.18 -3.85 10.00 -39.38 -0.39 -4.25 16 17 C 0.09 1.79 6.69 -39.31 -0.26 1.53 16 18 O -0.51 -8.62 13.49 -19.41 -0.26 -8.89 16 19 C -0.18 -3.67 9.46 -39.12 -0.37 -4.04 16 20 C 0.09 1.90 5.95 -83.42 -0.50 1.41 16 21 H 0.06 0.98 7.31 -51.93 -0.38 0.60 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.03 0.47 8.09 -51.93 -0.42 0.05 16 24 H 0.04 0.68 7.84 -51.93 -0.41 0.27 16 25 H 0.08 1.71 7.76 -51.93 -0.40 1.31 16 26 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.15 3.80 6.06 -52.49 -0.32 3.49 16 28 H 0.11 2.11 8.06 -52.49 -0.42 1.68 16 29 H 0.38 4.59 9.06 45.56 0.41 5.01 16 30 H 0.11 1.99 7.37 -52.49 -0.39 1.61 16 LS Contribution 251.91 15.07 3.80 3.80 Total: -1.00 -29.13 251.91 -7.14 -36.27 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -2.70 Total: 4.52 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -2.55 Total: -17.65 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: -0.40 Total: -33.99 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.26 Total: -8.89 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.13 -7.14 -36.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260953587.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.093 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds