Wall clock time and date at job start Mon Mar 30 2020 20:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47909 * 111.00123 * 2 1 4 4 C 1.54588 * 102.63510 * 210.80110 * 3 2 1 5 5 H 1.08999 * 110.73970 * 143.83584 * 4 3 2 6 6 C 1.50700 * 110.73779 * 267.16108 * 4 3 2 7 7 H 1.08000 * 119.99735 * 354.87931 * 6 4 3 8 8 C 1.37880 * 119.99973 * 174.87739 * 6 4 3 9 9 N 1.31510 * 119.99955 * 0.02562 * 8 6 4 10 10 Si 1.86799 * 119.99927 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47137 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46725 * 120.00484 * 10 8 6 13 13 H 1.48495 * 109.47421 * 240.00422 * 10 8 6 14 14 C 1.51602 * 102.84592 * 25.49792 * 4 3 2 15 15 C 1.37975 * 131.48250 * 163.89740 * 14 4 3 16 16 C 1.38197 * 120.14928 * 180.65353 * 15 14 4 17 17 C 1.38813 * 119.83233 * 359.97438 * 16 15 14 18 18 O 1.35896 * 119.93035 * 179.86653 * 17 16 15 19 19 C 1.38400 * 120.14130 * 359.89495 * 17 16 15 20 20 C 1.39007 * 107.94580 * 344.22849 * 14 4 3 21 21 H 1.09003 * 109.47200 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46878 * 300.06980 * 1 2 3 23 23 H 1.08994 * 109.47444 * 60.07230 * 1 2 3 24 24 H 1.09004 * 110.77907 * 329.08768 * 3 2 1 25 25 H 1.09005 * 110.77979 * 92.51085 * 3 2 1 26 26 H 0.97000 * 119.99878 * 179.97438 * 9 8 6 27 27 H 1.07997 * 119.92406 * 0.62693 * 15 14 4 28 28 H 1.08000 * 120.08350 * 179.97438 * 16 15 14 29 29 H 0.96691 * 113.99993 * 90.00189 * 18 17 16 30 30 H 1.07999 * 119.92344 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.3299 1.2322 -0.7724 5 1 3.5181 2.1105 -1.3898 6 6 4.4743 0.9908 0.1779 7 1 4.3073 1.0260 1.2443 8 6 5.7346 0.7251 -0.3142 9 7 5.9381 0.6827 -1.6128 10 14 7.1534 0.4266 0.8637 11 1 6.6654 0.5293 2.2625 12 1 7.7113 -0.9301 0.6329 13 1 8.2112 1.4428 0.6322 14 6 3.0833 0.0114 -1.6368 15 6 3.7462 -0.4720 -2.7462 16 6 3.3045 -1.6221 -3.3722 17 6 2.1916 -2.2913 -2.8820 18 8 1.7539 -3.4210 -3.4977 19 6 1.5264 -1.8103 -1.7677 20 6 1.9709 -0.6526 -1.1329 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5149 0.8894 23 1 -0.3634 0.5127 -0.8906 24 1 1.3214 2.0552 -0.5236 25 1 2.1794 1.7259 1.0182 26 1 6.8248 0.4962 -1.9589 27 1 4.6119 0.0499 -3.1263 28 1 3.8240 -1.9993 -4.2408 29 1 2.1491 -4.2341 -3.1548 30 1 0.6606 -2.3335 -1.3895 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260953587.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:24 Heat of formation + Delta-G solvation = -22.183605 kcal Electronic energy + Delta-G solvation = -14844.122540 eV Core-core repulsion = 12410.837294 eV Total energy + Delta-G solvation = -2433.285246 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.46188 -39.08684 -36.15562 -35.24766 -32.54468 -30.69761 -29.10407 -27.36139 -25.69993 -23.45830 -22.06709 -21.61534 -18.87274 -18.62056 -17.22360 -16.55029 -16.30581 -16.20114 -15.91875 -14.99433 -14.77111 -14.28731 -14.06464 -13.51813 -13.22294 -13.14048 -12.75037 -12.71106 -12.46954 -12.38349 -12.10877 -11.42181 -11.35086 -11.18412 -10.57222 -10.56610 -9.28886 -8.44583 -8.04860 -6.22123 0.60172 0.69261 1.40155 1.42889 1.53171 2.42402 2.87295 2.96210 3.18908 3.63220 4.06558 4.18720 4.29806 4.41228 4.50338 4.58757 4.64262 4.80631 4.88761 4.92276 5.07867 5.29320 5.39871 5.58309 5.70377 5.82091 5.90530 6.09194 6.23276 6.31318 6.47829 6.82728 6.98873 7.43373 8.93530 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.012017 C = 0.009257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.687769 B = 2329.471148 C = 3024.116445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.484 5.484 3 C 0.058 3.942 4 C 0.065 3.935 5 H 0.014 0.986 6 C -0.515 4.515 7 H 0.056 0.944 8 C 0.019 3.981 9 N -0.901 5.901 10 Si 0.954 3.046 11 H -0.270 1.270 12 H -0.286 1.286 13 H -0.278 1.278 14 C -0.113 4.113 15 C -0.062 4.062 16 C -0.192 4.192 17 C 0.106 3.894 18 O -0.503 6.503 19 C -0.182 4.182 20 C 0.082 3.918 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.034 0.966 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.262 0.738 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.404 0.596 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.476 -3.994 -0.102 8.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.199 5.199 3 C -0.068 4.068 4 C 0.046 3.954 5 H 0.032 0.968 6 C -0.552 4.552 7 H 0.074 0.926 8 C -0.181 4.181 9 N -0.539 5.539 10 Si 0.780 3.220 11 H -0.194 1.194 12 H -0.212 1.212 13 H -0.203 1.203 14 C -0.116 4.116 15 C -0.081 4.081 16 C -0.211 4.211 17 C 0.062 3.938 18 O -0.315 6.315 19 C -0.203 4.203 20 C -0.016 4.016 21 H 0.098 0.902 22 H 0.109 0.891 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.262 0.738 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.582 -3.837 -0.006 8.497 hybrid contribution 1.176 -0.140 0.126 1.191 sum -6.406 -3.977 0.121 7.541 Atomic orbital electron populations 1.22620 0.84901 1.03314 1.01920 1.60526 1.09738 1.15179 1.34419 1.23277 0.95358 0.86726 1.01417 1.18579 0.92749 0.91560 0.92496 0.96803 1.21275 0.92946 1.48532 0.92492 0.92552 1.25662 1.00944 0.94909 0.96611 1.69951 1.22374 1.49137 1.12472 0.85559 0.79415 0.77454 0.79529 1.19424 1.21189 1.20331 1.21172 0.95009 1.00450 0.94982 1.20937 0.97643 0.95177 0.94309 1.21416 0.98230 0.98550 1.02919 1.17932 0.93673 0.89742 0.92489 1.84710 1.69323 1.15548 1.61950 1.20527 1.03932 0.98235 0.97614 1.19735 0.96297 0.95667 0.89894 0.90216 0.89126 0.94718 0.92540 0.89327 0.92922 0.85026 0.85148 0.73838 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.16 127.69 1.17 1.71 16 2 N -0.48 -19.26 5.31 -713.46 -3.79 -23.05 16 3 C 0.06 2.38 6.43 86.65 0.56 2.93 16 4 C 0.06 3.27 3.02 -11.46 -0.03 3.24 16 5 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 6 C -0.51 -28.11 8.59 25.60 0.22 -27.89 16 7 H 0.06 3.06 7.59 -2.91 -0.02 3.04 16 8 C 0.02 1.01 5.33 84.66 0.45 1.46 16 9 N -0.90 -49.94 9.80 21.45 0.21 -49.73 16 10 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 13 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 14 C -0.11 -5.56 5.22 -19.45 -0.10 -5.66 16 15 C -0.06 -2.96 8.88 22.20 0.20 -2.76 16 16 C -0.19 -7.85 10.00 22.40 0.22 -7.63 16 17 C 0.11 3.99 6.69 22.45 0.15 4.14 16 18 O -0.50 -15.26 13.49 -92.38 -1.25 -16.51 16 19 C -0.18 -6.95 9.46 22.57 0.21 -6.74 16 20 C 0.08 3.58 5.95 38.27 0.23 3.81 16 21 H 0.08 2.10 7.31 -2.39 -0.02 2.08 16 22 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 23 H 0.03 0.99 8.09 -2.39 -0.02 0.97 16 24 H 0.06 2.05 7.84 -2.38 -0.02 2.03 16 25 H 0.09 3.51 7.76 -2.38 -0.02 3.49 16 26 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 27 H 0.13 6.82 6.06 -2.91 -0.02 6.80 16 28 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 29 H 0.40 8.13 9.06 -74.06 -0.67 7.46 16 30 H 0.13 4.39 7.37 -2.91 -0.02 4.37 16 Total: -1.00 -62.41 251.91 0.96 -61.46 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.48 Total: 15.71 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 3.27 Total: -33.39 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -3.58 Total: -72.77 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -1.25 Total: -16.51 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -62.41 0.96 -61.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260953587.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.272 kcal (2) G-P(sol) polarization free energy of solvation -62.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds