Wall clock time and date at job start Mon Mar 30 2020 20:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47905 * 111.00036 * 2 1 4 4 C 1.54589 * 102.63705 * 148.98576 * 3 2 1 5 5 H 1.08999 * 110.73864 * 215.83149 * 4 3 2 6 6 C 1.50694 * 110.73413 * 92.69372 * 4 3 2 7 7 H 1.08000 * 120.00563 * 2.48230 * 6 4 3 8 8 C 1.37885 * 119.99902 * 182.48394 * 6 4 3 9 9 N 1.31516 * 119.99913 * 359.97438 * 8 6 4 10 10 Si 1.86798 * 119.99766 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47353 * 269.99586 * 10 8 6 12 12 H 1.48501 * 109.47293 * 30.00037 * 10 8 6 13 13 H 1.48504 * 109.46680 * 149.99835 * 10 8 6 14 14 C 1.51588 * 103.01889 * 334.26193 * 4 3 2 15 15 C 1.37938 * 131.49450 * 196.35475 * 14 4 3 16 16 C 1.38716 * 120.03606 * 179.73579 * 15 14 4 17 17 O 1.36001 * 120.11227 * 179.97438 * 16 15 14 18 18 C 1.38714 * 119.76928 * 359.97117 * 16 15 14 19 19 C 1.39029 * 120.33401 * 0.13903 * 18 16 15 20 20 C 1.39369 * 119.96354 * 359.97438 * 19 18 16 21 21 H 1.09001 * 109.47366 * 59.99541 * 1 2 3 22 22 H 1.09003 * 109.46676 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47250 * 299.99339 * 1 2 3 24 24 H 1.09008 * 110.77160 * 30.69913 * 3 2 1 25 25 H 1.09002 * 110.94298 * 267.35439 * 3 2 1 26 26 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 27 27 H 1.07996 * 119.98511 * 359.70940 * 15 14 4 28 28 H 0.96694 * 114.00479 * 90.00171 * 17 16 15 29 29 H 1.08002 * 119.89770 * 180.14433 * 18 16 15 30 30 H 1.07997 * 120.17325 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3808 0.0000 4 6 3.3272 1.2332 0.7772 5 1 3.5161 2.1150 1.3895 6 6 4.4743 0.9872 -0.1685 7 1 4.3025 0.9765 -1.2347 8 6 5.7434 0.7755 0.3273 9 7 5.9528 0.7890 1.6256 10 14 7.1652 0.4698 -0.8450 11 1 7.2912 -0.9876 -1.1010 12 1 6.9116 1.1772 -2.1259 13 1 8.4231 0.9767 -0.2402 14 6 3.0797 0.0177 1.6486 15 6 3.7381 -0.4564 2.7641 16 6 3.2975 -1.6125 3.3913 17 8 3.9458 -2.0817 4.4910 18 6 2.1932 -2.2883 2.8932 19 6 1.5288 -1.8142 1.7677 20 6 1.9718 -0.6541 1.1350 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.3194 2.0558 0.5203 25 1 2.1826 1.7277 -1.0169 26 1 6.8455 0.6397 1.9744 27 1 4.5975 0.0724 3.1491 28 1 3.6045 -1.7350 5.3266 29 1 1.8469 -3.1873 3.3813 30 1 0.6691 -2.3422 1.3823 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260973481.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:38:27 Heat of formation + Delta-G solvation = -24.384710 kcal Electronic energy + Delta-G solvation = -14862.021794 eV Core-core repulsion = 12428.641101 eV Total energy + Delta-G solvation = -2433.380693 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.37403 -39.02775 -35.92554 -35.36820 -32.73316 -30.20150 -29.45588 -27.35846 -25.51642 -23.57958 -22.05336 -21.55875 -18.97533 -18.36083 -17.28297 -16.81079 -16.42796 -16.00662 -15.85255 -14.86192 -14.72920 -14.26700 -13.72979 -13.56600 -13.36013 -13.07587 -12.78744 -12.75851 -12.44710 -12.40620 -12.24918 -11.64616 -11.31424 -10.98644 -10.58658 -10.44011 -9.40254 -8.36057 -8.08347 -6.24802 0.57152 0.73763 1.38368 1.40651 1.49406 2.40179 2.84552 3.06530 3.20901 3.52449 4.04355 4.23119 4.33604 4.39278 4.54198 4.66047 4.66614 4.79060 4.89155 4.96029 5.09327 5.33962 5.39302 5.56146 5.69772 5.79778 5.87295 6.06173 6.21510 6.29441 6.51396 6.80512 7.06415 7.40609 8.90271 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.022856 B = 0.013639 C = 0.009482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.757522 B = 2052.479806 C = 2952.400508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.486 5.486 3 C 0.059 3.941 4 C 0.064 3.936 5 H 0.013 0.987 6 C -0.516 4.516 7 H 0.057 0.943 8 C 0.016 3.984 9 N -0.901 5.901 10 Si 0.954 3.046 11 H -0.285 1.285 12 H -0.264 1.264 13 H -0.281 1.281 14 C -0.093 4.093 15 C -0.110 4.110 16 C 0.051 3.949 17 O -0.508 6.508 18 C -0.138 4.138 19 C -0.137 4.137 20 C 0.058 3.942 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.036 0.964 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.260 0.740 27 H 0.124 0.876 28 H 0.398 0.602 29 H 0.150 0.850 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.923 -2.526 2.023 10.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.200 5.200 3 C -0.067 4.067 4 C 0.045 3.955 5 H 0.031 0.969 6 C -0.554 4.554 7 H 0.075 0.925 8 C -0.184 4.184 9 N -0.539 5.539 10 Si 0.780 3.220 11 H -0.212 1.212 12 H -0.188 1.188 13 H -0.206 1.206 14 C -0.096 4.096 15 C -0.129 4.129 16 C 0.006 3.994 17 O -0.319 6.319 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.039 4.039 21 H 0.106 0.894 22 H 0.101 0.899 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.069 0.931 27 H 0.141 0.859 28 H 0.254 0.746 29 H 0.168 0.832 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.350 -3.039 1.194 9.904 hybrid contribution 0.824 0.532 0.518 1.109 sum -8.526 -2.507 1.712 9.050 Atomic orbital electron populations 1.22628 0.84741 1.03487 1.01882 1.60610 1.09867 1.14965 1.34557 1.23229 0.95145 0.87032 1.01255 1.18593 0.92924 0.91571 0.92417 0.96855 1.21254 0.92333 1.49193 0.92610 0.92459 1.25709 1.01180 0.94915 0.96591 1.69969 1.22013 1.49377 1.12551 0.85620 0.78913 0.77945 0.79570 1.21186 1.18801 1.20635 1.21134 0.94525 1.00160 0.93797 1.21209 0.99042 0.95969 0.96727 1.18462 0.94645 0.94590 0.91694 1.84805 1.60707 1.70549 1.15888 1.21395 0.95126 1.01052 0.98105 1.20679 1.02450 0.95803 0.96840 1.20164 0.96799 0.96604 0.90380 0.89442 0.89860 0.94513 0.92440 0.89491 0.93094 0.85851 0.74562 0.83220 0.83643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.16 127.69 1.17 1.69 16 2 N -0.49 -19.00 5.32 -712.75 -3.79 -22.79 16 3 C 0.06 2.42 6.43 86.65 0.56 2.98 16 4 C 0.06 3.25 2.95 -11.46 -0.03 3.22 16 5 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 6 C -0.52 -28.83 8.56 25.60 0.22 -28.61 16 7 H 0.06 3.17 7.60 -2.91 -0.02 3.15 16 8 C 0.02 0.90 5.34 84.66 0.45 1.35 16 9 N -0.90 -52.12 10.09 21.45 0.22 -51.90 16 10 Si 0.95 44.92 29.54 68.60 2.03 46.95 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 12 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 14 C -0.09 -4.61 5.26 -19.38 -0.10 -4.71 16 15 C -0.11 -5.42 8.95 22.31 0.20 -5.22 16 16 C 0.05 2.12 6.71 22.50 0.15 2.27 16 17 O -0.51 -18.48 13.51 -93.56 -1.26 -19.74 16 18 C -0.14 -4.91 10.00 22.57 0.23 -4.68 16 19 C -0.14 -4.92 9.59 22.73 0.22 -4.70 16 20 C 0.06 2.49 5.97 38.33 0.23 2.72 16 21 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 22 H 0.08 2.01 7.32 -2.39 -0.02 2.00 16 23 H 0.04 0.97 8.09 -2.39 -0.02 0.95 16 24 H 0.06 2.06 7.84 -2.38 -0.02 2.04 16 25 H 0.09 3.46 7.77 -2.39 -0.02 3.44 16 26 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.12 6.73 6.17 -2.91 -0.02 6.71 16 28 H 0.40 9.82 9.06 -74.06 -0.67 9.15 16 29 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 30 H 0.15 4.14 7.38 -2.91 -0.02 4.11 16 Total: -1.00 -66.16 252.59 0.96 -65.21 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.48 Total: 15.97 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 3.29 Total: -33.70 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -3.57 Total: -74.69 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -1.26 Total: -19.74 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -66.16 0.96 -65.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973481.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.823 kcal (2) G-P(sol) polarization free energy of solvation -66.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds